Variant report

Variant	rs73860652
Chromosome Location	chr3:100184971-100184972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60562621	1.00[AFR][1000 genomes]
rs73860636	0.83[AFR][1000 genomes]
rs73860642	0.83[AFR][1000 genomes]
rs73860644	1.00[AFR][1000 genomes]
rs73860647	1.00[AFR][1000 genomes]
rs73860656	0.83[AFR][1000 genomes]
rs73860659	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100172200-100185200	Weak transcription	Aorta	Aorta
2	chr3:100183000-100185000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:100184400-100185600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:100184400-100186200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:100184600-100185000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:100184600-100185400	Enhancers	NHEK	skin
7	chr3:100184600-100185600	Flanking Active TSS	GM12878-XiMat	blood
8	chr3:100184600-100186200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:100184800-100185000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:100184800-100185200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:100184800-100185400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:100184800-100185400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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