Variant report

Variant	rs73860832
Chromosome Location	chr4:166679168-166679169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59074716	1.00[AMR][1000 genomes]
rs73860830	1.00[AMR][1000 genomes]
rs73860837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664758	1.00[AMR][1000 genomes]
rs7673723	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2754222	chr4:166606890-166737921	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166662600-166685000	Weak transcription	HMEC	breast
2	chr4:166668200-166681600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:166678000-166679200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:166678000-166679400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:166678000-166679600	Enhancers	Fetal Heart	heart
6	chr4:166678000-166679800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:166678200-166679400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:166678200-166679600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:166678400-166679200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:166678800-166679200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr4:166679000-166679400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr4:166679000-166679400	Enhancers	Fetal Lung	lung
13	chr4:166679000-166681200	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:166679000-166681400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:166679000-166681600	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links