Variant report

Variant	rs73861174
Chromosome Location	chr4:152277827-152277828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr4:152277749-152277900	HepG2	liver:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
2	FOSL1	chr4:152277492-152278199	HCT-116	colon:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
3	FOSL1	chr4:152277595-152278116	HCT-116	colon:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
4	JUND	chr4:152277647-152277993	SK-N-SH	brain:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
5	FOS	chr4:152277625-152278010	MCF10A-Er-Src	breast:	n/a	chr4:152277847-152277858 chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
6	FOSL2	chr4:152277691-152277982	A549	lung:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
7	FOS	chr4:152277670-152278010	MCF10A-Er-Src	breast:	n/a	chr4:152277847-152277858 chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
8	JUND	chr4:152277575-152278180	HCT-116	colon:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
9	FOSL2	chr4:152277573-152278033	SK-N-SH	brain:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
10	FOS	chr4:152277667-152278040	HUVEC	blood vessel:	n/a	chr4:152277847-152277858 chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
11	JUND	chr4:152277521-152278199	HCT-116	colon:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
12	FOS	chr4:152277672-152277999	MCF10A-Er-Src	breast:	n/a	chr4:152277847-152277858 chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
13	FOS	chr4:152277664-152278017	MCF10A-Er-Src	breast:	n/a	chr4:152277847-152277858 chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856
14	FOSL2	chr4:152277733-152277956	HepG2	liver:	n/a	chr4:152277852-152277860 chr4:152277849-152277858 chr4:152277849-152277856

Variant related genes	Relation type
ENSG00000270265	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56114233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58657718	1.00[AMR][1000 genomes]
rs60483130	1.00[AMR][1000 genomes]
rs73861172	1.00[AMR][1000 genomes]
rs73861187	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1025192	chr4:152202627-152498890	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537307	chr4:152202627-152498890	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152264600-152279400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:152269600-152280600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:152269800-152281000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:152275600-152282000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:152276000-152278000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:152276000-152278200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:152276000-152278400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:152276200-152278200	Enhancers	HMEC	breast
9	chr4:152276200-152278200	Enhancers	NHEK	skin
10	chr4:152276800-152278200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:152277000-152278000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:152277000-152278000	Enhancers	NHDF-Ad	bronchial
13	chr4:152277000-152278600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:152277200-152278000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:152277200-152278000	Enhancers	Osteobl	bone
16	chr4:152277200-152278200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:152277200-152278200	Enhancers	Esophagus	oesophagus
18	chr4:152277400-152278600	Weak transcription	Brain Anterior Caudate	brain
19	chr4:152277400-152280800	Weak transcription	Right Atrium	heart
20	chr4:152277600-152278000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:152277600-152278000	Enhancers	A549	lung
22	chr4:152277800-152278200	Enhancers	Brain Cingulate Gyrus	brain

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