Variant report

Variant	rs73861195
Chromosome Location	chr3:133432403-133432404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2718810	0.88[EUR][1000 genomes]
rs72972294	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv963279	chr3:133426521-133449029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133412200-133437600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:133418800-133437600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:133431000-133433800	Weak transcription	HepG2	liver
4	chr3:133431200-133434800	Weak transcription	Brain Angular Gyrus	brain
5	chr3:133431200-133435400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:133431200-133436000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:133431600-133434200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:133431600-133434800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:133431600-133436200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:133432400-133432600	Enhancers	Brain Substantia Nigra	brain
11	chr3:133432400-133433000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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