Variant report

Variant	rs73862076
Chromosome Location	chr4:152569635-152569636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152568195..152570506-chr4:152573252..152576175,2	K562	blood:

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10001439	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10009423	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10025109	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10031175	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10857261	0.86[EUR][1000 genomes]
rs11099813	0.83[EUR][1000 genomes]
rs11099818	0.89[EUR][1000 genomes]
rs11099824	0.89[EUR][1000 genomes]
rs11723643	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11726171	0.83[EUR][1000 genomes]
rs11726222	0.89[EUR][1000 genomes]
rs11726545	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11728541	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11729514	0.89[EUR][1000 genomes]
rs11729871	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11730733	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732441	0.87[EUR][1000 genomes]
rs11735143	0.89[EUR][1000 genomes]
rs11736961	0.89[EUR][1000 genomes]
rs11934818	0.89[EUR][1000 genomes]
rs11947720	0.87[EUR][1000 genomes]
rs12054502	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12498556	0.89[EUR][1000 genomes]
rs12498878	0.89[EUR][1000 genomes]
rs12502212	0.89[EUR][1000 genomes]
rs12502967	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12504273	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12508678	0.89[EUR][1000 genomes]
rs12511280	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1366908	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1372979	0.89[EUR][1000 genomes]
rs1443085	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17027716	0.86[EUR][1000 genomes]
rs17027818	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17275584	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17275605	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17275612	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1992517	0.89[EUR][1000 genomes]
rs2406972	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28417319	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28447105	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28463438	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28483174	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28498882	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28527216	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28545583	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28574706	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28605105	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28608075	0.87[EUR][1000 genomes]
rs28608757	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28672085	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28706249	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28715753	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3172567	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35588363	0.81[EUR][1000 genomes]
rs36083376	0.89[EUR][1000 genomes]
rs3792689	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3811749	0.81[EUR][1000 genomes]
rs3934474	0.89[EUR][1000 genomes]
rs4371601	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4622982	0.87[EUR][1000 genomes]
rs56092201	0.89[EUR][1000 genomes]
rs56199243	0.85[EUR][1000 genomes]
rs56763519	0.86[EUR][1000 genomes]
rs57272881	0.89[EUR][1000 genomes]
rs57348790	0.82[EUR][1000 genomes]
rs57556564	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58443173	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58961701	0.85[EUR][1000 genomes]
rs59731141	0.89[EUR][1000 genomes]
rs59744221	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59811197	0.87[EUR][1000 genomes]
rs59984665	0.89[EUR][1000 genomes]
rs60077220	0.89[EUR][1000 genomes]
rs60122169	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60169090	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60618075	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60707008	0.89[EUR][1000 genomes]
rs61294884	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61302767	0.89[EUR][1000 genomes]
rs61630225	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6535802	0.89[EUR][1000 genomes]
rs6535805	0.89[EUR][1000 genomes]
rs6817373	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6822729	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6822737	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6826318	0.89[EUR][1000 genomes]
rs6832899	0.89[EUR][1000 genomes]
rs6832902	0.87[EUR][1000 genomes]
rs6833277	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6835310	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6838608	0.87[EUR][1000 genomes]
rs6839738	0.97[EUR][1000 genomes]
rs6841515	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6843267	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6844169	0.89[EUR][1000 genomes]
rs6845067	0.89[EUR][1000 genomes]
rs6846013	0.89[EUR][1000 genomes]
rs6846759	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6853342	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6856392	0.85[EUR][1000 genomes]
rs6858573	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72962929	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72964908	0.90[AMR][1000 genomes]
rs73861826	0.86[EUR][1000 genomes]
rs73861827	0.86[EUR][1000 genomes]
rs73862055	0.89[EUR][1000 genomes]
rs73862080	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73862085	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73864013	0.86[EUR][1000 genomes]
rs7653926	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7655466	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7662214	0.89[EUR][1000 genomes]
rs7662713	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7664074	0.89[EUR][1000 genomes]
rs7671456	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7675933	0.81[EUR][1000 genomes]
rs7677528	0.89[EUR][1000 genomes]
rs7699787	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9683881	0.83[EUR][1000 genomes]
rs9917912	0.89[EUR][1000 genomes]
rs9996600	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9999456	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152544000-152570600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:152544400-152570600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152545600-152578600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:152546400-152570600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:152551000-152570800	Weak transcription	Lung	lung
6	chr4:152551000-152570800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:152554000-152573800	Weak transcription	Psoas Muscle	Psoas
8	chr4:152561000-152570600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:152561000-152579400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:152561400-152570600	Weak transcription	Gastric	stomach
11	chr4:152562600-152570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:152562600-152577400	Weak transcription	HMEC	breast
13	chr4:152562800-152570200	Weak transcription	NHEK	skin
14	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
15	chr4:152564200-152595200	Weak transcription	Aorta	Aorta
16	chr4:152565600-152572600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:152565800-152570800	Weak transcription	Ovary	ovary
18	chr4:152566000-152577200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:152566200-152570400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:152566400-152570600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:152567000-152569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:152567000-152571000	Weak transcription	Fetal Stomach	stomach
23	chr4:152567200-152571800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr4:152568000-152570600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:152568000-152570600	Weak transcription	Fetal Intestine Small	intestine
28	chr4:152568200-152571600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr4:152568200-152577800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr4:152568400-152570000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:152568600-152570400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr4:152568600-152570400	Weak transcription	Pancreas	Pancrea
33	chr4:152568600-152570600	Weak transcription	Esophagus	oesophagus
34	chr4:152568600-152570600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr4:152568600-152570800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr4:152568600-152577200	Weak transcription	Colonic Mucosa	Colon
37	chr4:152569000-152570800	Weak transcription	Fetal Intestine Large	intestine
38	chr4:152569200-152570200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr4:152569200-152570800	Weak transcription	Liver	Liver
40	chr4:152569200-152571000	Weak transcription	HepG2	liver
41	chr4:152569200-152572200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:152569400-152570600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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