Variant report

Variant	rs73863040
Chromosome Location	chr3:101028843-101028844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16843786	1.00[AMR][1000 genomes]
rs6777374	1.00[AMR][1000 genomes]
rs6786031	1.00[AMR][1000 genomes]
rs6801150	1.00[AMR][1000 genomes]
rs73863039	1.00[AMR][1000 genomes]
rs73863043	1.00[AMR][1000 genomes]
rs73863045	1.00[AMR][1000 genomes]
rs73863085	1.00[AMR][1000 genomes]
rs7648250	1.00[AMR][1000 genomes]
rs9683248	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101026600-101029400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:101028000-101044200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:101028200-101029000	ZNF genes & repeats	Primary T cells from cord blood	blood
4	chr3:101028400-101030800	Enhancers	Fetal Kidney	kidney
5	chr3:101028600-101029000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:101028600-101029000	Weak transcription	Fetal Lung	lung
7	chr3:101028800-101029600	Weak transcription	HUVEC	blood vessel
8	chr3:101028800-101030200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:101028800-101031000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:101028800-101032800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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