Variant report

Variant	rs73863078
Chromosome Location	chr3:101080323-101080324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101070645..101072327-chr3:101080137..101082704,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55699383	0.85[AFR][1000 genomes]
rs56214693	1.00[AFR][1000 genomes]
rs57510745	0.85[AFR][1000 genomes]
rs59131372	1.00[AFR][1000 genomes]
rs59427401	1.00[AFR][1000 genomes]
rs60283430	0.85[AFR][1000 genomes]
rs60475301	0.81[AFR][1000 genomes]
rs61050107	0.85[AFR][1000 genomes]
rs61256299	1.00[AFR][1000 genomes]
rs73862803	0.85[AFR][1000 genomes]
rs73862805	0.85[AFR][1000 genomes]
rs73863046	0.85[AFR][1000 genomes]
rs73863071	1.00[AFR][1000 genomes]
rs73863126	0.85[AFR][1000 genomes]
rs73863128	0.85[AFR][1000 genomes]
rs73865603	1.00[AFR][1000 genomes]
rs73865636	0.85[AFR][1000 genomes]
rs73865639	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101030800-101096400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:101038600-101101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:101038800-101089800	Weak transcription	Pancreas	Pancrea
4	chr3:101039800-101106600	Weak transcription	Thymus	Thymus
5	chr3:101040600-101086800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:101040800-101090000	Weak transcription	Brain Angular Gyrus	brain
7	chr3:101042800-101089600	Weak transcription	NH-A	brain
8	chr3:101043200-101105000	Weak transcription	Brain Anterior Caudate	brain
9	chr3:101043800-101096600	Weak transcription	Brain Substantia Nigra	brain
10	chr3:101044400-101103000	Weak transcription	Gastric	stomach
11	chr3:101044600-101081800	Weak transcription	Aorta	Aorta
12	chr3:101045800-101110800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:101046400-101089000	Weak transcription	Fetal Brain Male	brain
14	chr3:101047400-101096000	Weak transcription	Psoas Muscle	Psoas
15	chr3:101048400-101082400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:101048400-101084400	Weak transcription	HSMM	muscle
17	chr3:101048600-101088000	Weak transcription	HUVEC	blood vessel
18	chr3:101049200-101096000	Weak transcription	Ovary	ovary
19	chr3:101049200-101102200	Weak transcription	Right Ventricle	heart
20	chr3:101053200-101082600	Weak transcription	Fetal Stomach	stomach
21	chr3:101053200-101083200	Weak transcription	K562	blood
22	chr3:101054600-101085000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:101056200-101081600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr3:101056200-101082600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr3:101056200-101082800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:101056200-101084600	Weak transcription	Fetal Heart	heart
27	chr3:101058200-101081800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:101059800-101082800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr3:101066000-101089800	Weak transcription	Brain Germinal Matrix	brain
30	chr3:101066000-101094000	Weak transcription	Fetal Intestine Large	intestine
31	chr3:101066200-101089000	Weak transcription	Fetal Lung	lung
32	chr3:101066200-101095400	Weak transcription	Fetal Kidney	kidney
33	chr3:101066200-101096000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:101066400-101085000	Weak transcription	Placenta	Placenta
35	chr3:101069000-101089800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr3:101069200-101083000	Weak transcription	Dnd41	blood
37	chr3:101073200-101091000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:101074600-101092200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:101075000-101084600	Weak transcription	Fetal Brain Female	brain
40	chr3:101075000-101085600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:101075600-101080400	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr3:101075800-101080400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:101076000-101085600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr3:101076000-101088000	Weak transcription	NHLF	lung
45	chr3:101076200-101080400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr3:101076200-101081800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:101076200-101102000	Weak transcription	Lung	lung
48	chr3:101076200-101105600	Weak transcription	Esophagus	oesophagus
49	chr3:101076600-101091400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr3:101076600-101096400	Weak transcription	Brain Hippocampus Middle	brain

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