Variant report

Variant	rs73864580
Chromosome Location	chr3:138184627-138184628
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138153677..138156615-chr3:138182530..138184739,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55890669	0.82[AFR][1000 genomes]
rs56055821	0.82[AFR][1000 genomes]
rs57025506	1.00[AFR][1000 genomes]
rs57863637	0.82[AFR][1000 genomes]
rs73864582	1.00[AFR][1000 genomes]
rs73864589	0.82[AFR][1000 genomes]
rs73868105	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv3447663	chr3:138096329-138273034	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv460864	chr3:138100539-138194435	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv591853	chr3:138100539-138194435	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv999041	chr3:138148812-138347988	Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv522517	chr3:138174523-138297982	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138161600-138198400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:138170800-138198400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:138171000-138193000	Weak transcription	Pancreas	Pancrea
4	chr3:138171200-138185400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:138171400-138198400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:138175200-138196000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:138176400-138184800	Genic enhancers	Fetal Muscle Leg	muscle
8	chr3:138176800-138187200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:138177600-138187200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:138177600-138195400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:138178000-138197000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:138178200-138196000	Weak transcription	Aorta	Aorta
13	chr3:138178600-138187000	Weak transcription	Right Atrium	heart
14	chr3:138178800-138188800	Weak transcription	Right Ventricle	heart
15	chr3:138179800-138188600	Weak transcription	Fetal Intestine Small	intestine
16	chr3:138179800-138199400	Weak transcription	Thymus	Thymus
17	chr3:138180400-138185600	Weak transcription	Brain Angular Gyrus	brain
18	chr3:138180800-138185600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:138180800-138187400	Weak transcription	NHDF-Ad	bronchial
20	chr3:138181000-138187600	Weak transcription	HSMM	muscle
21	chr3:138181200-138192400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:138182800-138185600	Enhancers	HSMMtube	muscle
23	chr3:138182800-138187400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:138182800-138187800	Strong transcription	Lung	lung
25	chr3:138183200-138185000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr3:138183200-138187600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:138183400-138186400	Weak transcription	Psoas Muscle	Psoas
28	chr3:138183600-138184800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr3:138183600-138187000	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:138184400-138186200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:138184400-138187000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:138184400-138188200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr3:138184400-138191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:138184400-138198400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:138184600-138185000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:138184600-138185000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:138184600-138185200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr3:138184600-138185400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr3:138184600-138186200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:138184600-138186200	Weak transcription	Fetal Stomach	stomach

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