Variant report

Variant	rs73865836
Chromosome Location	chr3:138893561-138893562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59857423	1.00[AFR][1000 genomes]
rs73864950	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138892200-138893600	Active TSS	Brain Substantia Nigra	brain
2	chr3:138893000-138894000	Enhancers	Brain Germinal Matrix	brain
3	chr3:138893000-138894600	Weak transcription	Ovary	ovary
4	chr3:138893200-138893800	Enhancers	Brain Angular Gyrus	brain
5	chr3:138893400-138893600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:138893400-138893600	Enhancers	NHDF-Ad	bronchial
7	chr3:138893400-138893800	Enhancers	Brain Anterior Caudate	brain
8	chr3:138893400-138894000	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:138893400-138894000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr3:138893400-138894600	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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