Variant report

Variant	rs73866285
Chromosome Location	chr3:142691941-142691942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13326802	0.83[ASN][1000 genomes]
rs58904989	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv877563	chr3:142661350-142743889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142689600-142693800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:142690800-142692000	Enhancers	Fetal Heart	heart
3	chr3:142691000-142693200	Bivalent Enhancer	HepG2	liver
4	chr3:142691200-142692000	Enhancers	Right Ventricle	heart
5	chr3:142691200-142692600	Enhancers	Left Ventricle	heart
6	chr3:142691200-142693800	Enhancers	Liver	Liver
7	chr3:142691200-142695200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:142691400-142692600	Weak transcription	K562	blood
9	chr3:142691400-142692800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:142691400-142693600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr3:142691400-142695600	Weak transcription	Right Atrium	heart
12	chr3:142691600-142692600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:142691600-142692600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:142691600-142693600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:142691800-142695200	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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