Variant report

Variant	rs73867041
Chromosome Location	chr3:142109211-142109212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16852327	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4462984	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55712145	1.00[AMR][1000 genomes]
rs55720941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55810370	0.89[AFR][1000 genomes]
rs56044159	1.00[AMR][1000 genomes]
rs56791995	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58286086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58978582	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59954506	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60153076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61076760	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61265290	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6440079	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440080	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440081	0.86[AFR][1000 genomes]
rs6796807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797767	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73864538	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73864539	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73864541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73867022	1.00[AMR][1000 genomes]
rs73867024	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73867035	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73867040	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618139	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv522549	chr3:141812759-142164735	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv520523	chr3:141818850-142110818	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv877556	chr3:141898980-142331360	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
7	nsv523945	chr3:141933649-142219542	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv1000083	chr3:141956718-142172666	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv877557	chr3:142090402-142150204	Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142046400-142112400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:142057400-142111400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:142059400-142111400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:142060800-142111200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr3:142063600-142111200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:142064600-142111400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr3:142066800-142115000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:142072400-142114600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:142074000-142113800	Weak transcription	HMEC	breast
10	chr3:142076000-142136400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:142076800-142120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:142076800-142138200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:142080000-142114000	Weak transcription	NHLF	lung
14	chr3:142083200-142113800	Weak transcription	Small Intestine	intestine
15	chr3:142083200-142114200	Weak transcription	A549	lung
16	chr3:142083400-142114800	Weak transcription	HepG2	liver
17	chr3:142083600-142158600	Weak transcription	NHEK	skin
18	chr3:142086200-142111400	Strong transcription	Fetal Thymus	thymus
19	chr3:142092800-142111200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:142094000-142114000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:142094400-142111400	Strong transcription	Liver	Liver
22	chr3:142096600-142113800	Weak transcription	HUVEC	blood vessel
23	chr3:142097000-142112600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:142098000-142110600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:142098000-142111400	Strong transcription	Duodenum Mucosa	Duodenum
26	chr3:142098200-142110400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr3:142098600-142111400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:142099800-142112600	Weak transcription	Pancreas	Pancrea
29	chr3:142100600-142111200	Strong transcription	Osteobl	bone
30	chr3:142104400-142111000	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:142104400-142113000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:142105000-142151800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr3:142105200-142111000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:142105400-142109400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:142105400-142111000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:142105400-142111000	Strong transcription	Placenta	Placenta
37	chr3:142105400-142111000	Strong transcription	Dnd41	blood
38	chr3:142105400-142111400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:142105400-142111400	Strong transcription	Primary B cells from cord blood	blood
40	chr3:142105600-142109800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr3:142105600-142110400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:142105600-142111200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:142105600-142111200	Strong transcription	Brain Germinal Matrix	brain
44	chr3:142105600-142111400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:142105600-142111400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr3:142105600-142111400	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr3:142105600-142116600	Strong transcription	Adipose Nuclei	Adipose
48	chr3:142105600-142123000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr3:142105800-142109400	Strong transcription	Brain Angular Gyrus	brain
50	chr3:142105800-142111200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links