Variant report

Variant	rs73869233
Chromosome Location	chr3:150131659-150131660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150003421..150005859-chr3:150130748..150133736,2	MCF-7	breast:
2	chr3:150124697..150131961-chr3:150259924..150266159,12	MCF-7	breast:
3	chr3:150129965..150132120-chr3:150321076..150323055,2	MCF-7	breast:
4	chr3:150029719..150032688-chr3:150130200..150132021,2	MCF-7	breast:
5	chr3:149966884..149969452-chr3:150130609..150132454,2	MCF-7	breast:
6	chr3:150130261..150132002-chr3:150158520..150160829,2	MCF-7	breast:
7	chr3:150101832..150103393-chr3:150130176..150133046,2	MCF-7	breast:
8	chr3:150130787..150132755-chr3:150164402..150166675,2	MCF-7	breast:
9	chr3:150128973..150131899-chr3:150220806..150223436,2	K562	blood:
10	chr3:150130662..150134020-chr3:150134493..150137721,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000243550	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000144895	Chromatin interaction
ENSG00000198843	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55752233	0.83[AFR][1000 genomes]
rs55857164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56203514	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56782857	0.87[AFR][1000 genomes]
rs58143991	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59185841	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59653532	1.00[AMR][1000 genomes]
rs60274646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61015726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61485586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72999319	1.00[AMR][1000 genomes]
rs73005478	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007757	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007760	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007763	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007779	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009403	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9917800	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	esv1828464	chr3:150096071-150149868	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1799287	chr3:150125721-150147118	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150124600-150132200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:150124600-150133000	Active TSS	Fetal Kidney	kidney
3	chr3:150124600-150133000	Active TSS	Right Atrium	heart
4	chr3:150124800-150133600	Active TSS	Stomach Smooth Muscle	stomach
5	chr3:150125000-150132400	Active TSS	Fetal Stomach	stomach
6	chr3:150125000-150132600	Active TSS	HSMMtube	muscle
7	chr3:150125000-150132800	Active TSS	Fetal Intestine Large	intestine
8	chr3:150125000-150133200	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr3:150125000-150137400	Active TSS	GM12878-XiMat	blood
10	chr3:150125200-150132400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:150125200-150132400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:150125400-150131800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:150125400-150132000	Active TSS	Brain Angular Gyrus	brain
14	chr3:150125400-150132400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr3:150125600-150132200	Active TSS	Fetal Thymus	thymus
16	chr3:150127200-150132400	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr3:150128400-150132600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:150128600-150133400	Transcr. at gene 5' and 3'	HSMM	muscle
19	chr3:150128800-150132600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr3:150128800-150133400	Active TSS	Right Ventricle	heart
21	chr3:150129200-150132200	Weak transcription	Pancreas	Pancrea
22	chr3:150129200-150132800	Active TSS	Fetal Muscle Leg	muscle
23	chr3:150129200-150133200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:150129200-150133800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:150129400-150132400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr3:150129400-150133200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:150129400-150133400	Weak transcription	Spleen	Spleen
28	chr3:150129400-150134400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:150129600-150132400	Active TSS	Muscle Satellite Cultured Cells	--
30	chr3:150129800-150131800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:150129800-150132800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:150130200-150132000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr3:150130600-150132200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
34	chr3:150130600-150132800	Transcr. at gene 5' and 3'	Dnd41	blood
35	chr3:150130600-150133600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:150130600-150134000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
37	chr3:150130800-150131800	Active TSS	HepG2	liver
38	chr3:150130800-150132000	Active TSS	Placenta Amnion	Placenta Amnion
39	chr3:150131000-150131800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr3:150131000-150131800	Active TSS	Fetal Lung	lung
41	chr3:150131000-150132000	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr3:150131000-150132200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr3:150131000-150132200	Active TSS	Ovary	ovary
44	chr3:150131000-150132400	Active TSS	Aorta	Aorta
45	chr3:150131000-150132600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:150131000-150133200	Weak transcription	Esophagus	oesophagus
47	chr3:150131000-150133200	Weak transcription	Left Ventricle	heart
48	chr3:150131000-150133200	Weak transcription	Small Intestine	intestine
49	chr3:150131000-150133400	Active TSS	Psoas Muscle	Psoas
50	chr3:150131000-150133400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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