Variant report

Variant	rs73869613
Chromosome Location	chr3:141171714-141171715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141022868..141024851-chr3:141170597..141172187,2	MCF-7	breast:
2	chr3:141078410..141082494-chr3:141170544..141172496,3	MCF-7	breast:
3	chr3:141025929..141033510-chr3:141171081..141179408,10	MCF-7	breast:
4	chr3:141169931..141172145-chr3:141175203..141179161,4	K562	blood:
5	chr3:141030674..141032798-chr3:141168575..141172474,3	K562	blood:
6	chr3:141023419..141025607-chr3:141171594..141173582,2	K562	blood:
7	chr3:141163698..141166261-chr3:141168947..141171763,3	MCF-7	breast:
8	chr3:141030343..141031265-chr3:141170565..141171975,8	K562	blood:
9	chr3:141164105..141165870-chr3:141170632..141173126,2	K562	blood:
10	chr3:140949389..140951483-chr3:141169503..141172131,2	K562	blood:
11	chr3:141029632..141032040-chr3:141170273..141172073,2	K562	blood:
12	chr3:141164105..141166380-chr3:141168817..141173824,4	K562	blood:
13	chr3:141079302..141080674-chr3:141170565..141171750,10	MCF-7	breast:
14	chr3:141169773..141172290-chr3:141203531..141206509,2	MCF-7	breast:
15	chr3:141118015..141122329-chr3:141169792..141173492,5	MCF-7	breast:
16	chr3:141082713..141089087-chr3:141169228..141173800,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155893	Chromatin interaction
ENSG00000249540	Chromatin interaction
ENSG00000249417	Chromatin interaction
ENSG00000177311	Chromatin interaction
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3732872	0.80[ASN][1000 genomes]
rs60759545	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141160400-141174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:141163000-141174000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:141164000-141174000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:141164200-141173600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:141164200-141176400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:141164400-141173200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:141164400-141173600	Weak transcription	Colonic Mucosa	Colon
8	chr3:141164600-141173000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:141164600-141173600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:141164800-141173000	Weak transcription	Gastric	stomach
11	chr3:141164800-141173400	Weak transcription	Brain Substantia Nigra	brain
12	chr3:141164800-141174400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:141165000-141173800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:141166400-141173600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:141166600-141171800	Weak transcription	HSMMtube	muscle
16	chr3:141166600-141172600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:141166600-141173400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:141166600-141173600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:141166600-141174200	Weak transcription	Ovary	ovary
20	chr3:141166600-141174600	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:141166600-141176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:141166600-141181600	Weak transcription	Pancreas	Pancrea
23	chr3:141166800-141173600	Weak transcription	Adipose Nuclei	Adipose
24	chr3:141166800-141173800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:141166800-141174000	Weak transcription	NHEK	skin
26	chr3:141166800-141176400	Weak transcription	HMEC	breast
27	chr3:141166800-141179200	Weak transcription	Fetal Brain Male	brain
28	chr3:141167000-141173200	Enhancers	NHLF	lung
29	chr3:141167400-141176600	Weak transcription	HSMM	muscle
30	chr3:141168000-141173800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:141168200-141173200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:141168200-141173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:141168400-141173400	Weak transcription	Lung	lung
34	chr3:141168400-141179200	Weak transcription	Fetal Heart	heart
35	chr3:141168600-141173400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:141168600-141181800	Weak transcription	Aorta	Aorta
37	chr3:141169000-141173000	Weak transcription	NHDF-Ad	bronchial
38	chr3:141169000-141179000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:141169200-141172800	Enhancers	K562	blood
40	chr3:141169400-141173600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:141170000-141171800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:141170000-141173400	Weak transcription	Left Ventricle	heart
43	chr3:141170000-141173600	Weak transcription	Placenta	Placenta
44	chr3:141170200-141172200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:141170200-141173400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:141170200-141173400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr3:141170600-141171800	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr3:141170600-141171800	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr3:141170600-141171800	Enhancers	NH-A	brain
50	chr3:141170600-141172000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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