Variant report

Variant	rs73870116
Chromosome Location	chr3:140319162-140319163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55738311	1.00[AMR][1000 genomes]
rs57681564	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58414173	1.00[AMR][1000 genomes]
rs61064452	0.91[AFR][1000 genomes]
rs72979248	1.00[AMR][1000 genomes]
rs73867607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73867608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73870114	1.00[AMR][1000 genomes]
rs73870124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73870125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634179	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634840	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7652720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv870185	chr3:140265153-140395673	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv877546	chr3:140299603-140468370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140310600-140320800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:140310600-140325400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:140317000-140320200	Weak transcription	HSMMtube	muscle
4	chr3:140317000-140321400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:140317000-140321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:140317200-140321200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:140317600-140319200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:140317600-140319200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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