Variant report

Variant	rs73870214
Chromosome Location	chr3:139579076-139579077
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139578912..139580848-chr3:139612319..139614014,2	MCF-7	breast:
2	chr3:139574779..139576285-chr3:139578004..139580557,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1426055	0.92[EUR][1000 genomes]
rs1834498	0.81[EUR][1000 genomes]
rs1834499	0.81[EUR][1000 genomes]
rs1834502	0.90[EUR][1000 genomes]
rs2330	0.89[EUR][1000 genomes]
rs2349987	0.92[EUR][1000 genomes]
rs73870206	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73870207	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73870208	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73870209	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73870210	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73870212	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73870213	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73870216	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73870228	0.97[EUR][1000 genomes]
rs7610272	0.92[EUR][1000 genomes]
rs7611408	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7633448	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7649717	0.81[EUR][1000 genomes]
rs813100	0.92[EUR][1000 genomes]
rs9985239	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139575200-139582800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:139578400-139579800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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