Variant report

Variant	rs73870348
Chromosome Location	chr3:141456165-141456166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:141456100-141456250	HL-60	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141455674..141460093-chr3:141592801..141597430,19	MCF-7	breast:
2	chr3:141452499..141459593-chr3:141591792..141599045,17	MCF-7	breast:
3	chr3:141357032..141359290-chr3:141454667..141456901,2	K562	blood:
4	chr3:141455466..141460652-chr3:141593125..141598625,15	K562	blood:
5	chr3:141455463..141459614-chr3:141593520..141599146,20	K562	blood:
6	chr3:141455584..141459326-chr3:141464266..141467931,6	MCF-7	breast:

No data

Variant related genes	Relation type
RNF7	TF binding region
ENSG00000069849	Chromatin interaction
ENSG00000114125	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6772451	1.00[AMR][1000 genomes]
rs7634385	1.00[AMR][1000 genomes]
rs7645629	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv877552	chr3:141420562-141466147	Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141444800-141456600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:141447800-141456600	Weak transcription	Fetal Intestine Large	intestine
3	chr3:141449800-141456600	Weak transcription	Stomach Mucosa	stomach
4	chr3:141451200-141456600	Weak transcription	Aorta	Aorta
5	chr3:141453400-141456600	Enhancers	K562	blood
6	chr3:141453800-141456400	Enhancers	HepG2	liver
7	chr3:141455000-141456600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:141455000-141457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:141455600-141456400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:141455600-141456600	Enhancers	Primary B cells from cord blood	blood
11	chr3:141455600-141456600	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:141455800-141456400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr3:141455800-141456600	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:141455800-141456600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:141455800-141456600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:141455800-141456600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:141455800-141456600	Enhancers	Fetal Thymus	thymus
18	chr3:141456000-141456600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr3:141456000-141456600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:141456000-141456600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:141456000-141456600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:141456000-141456600	Weak transcription	Placenta	Placenta
23	chr3:141456000-141456600	Enhancers	Dnd41	blood
24	chr3:141456000-141456600	Enhancers	GM12878-XiMat	blood
25	chr3:141456000-141457000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links