Variant report
| Variant | rs73870587 |
|---|---|
| Chromosome Location | chr3:143665939-143665940 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
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(count:2 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000181744 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs16854752 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28475588 | 1.00[AMR][1000 genomes] |
| rs56805765 | 1.00[AMR][1000 genomes] |
| rs57432713 | 1.00[AMR][1000 genomes] |
| rs73870585 | 0.93[AFR][1000 genomes] |
| rs73870586 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73870994 | 1.00[AMR][1000 genomes] |
| rs73872624 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73872667 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7623588 | 0.89[AFR][1000 genomes] |
| rs7643008 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877568 | chr3:143621140-143992630 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | esv3365190 | chr3:143642195-143925886 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| 3 | nsv591922 | chr3:143645242-143825439 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
