Variant report

Variant	rs73870599
Chromosome Location	chr4:174159919-174159920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174087023..174089565-chr4:174159233..174161373,2	MCF-7	breast:
2	chr4:174149045..174150839-chr4:174157691..174160667,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73872505	0.83[AMR][1000 genomes]
rs73872508	0.83[AMR][1000 genomes]
rs73872537	0.83[AMR][1000 genomes]
rs73872541	0.83[AMR][1000 genomes]
rs73872542	0.83[AMR][1000 genomes]
rs73872543	0.83[AMR][1000 genomes]
rs7662281	0.83[AMR][1000 genomes]
rs7671769	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684771	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174123600-174174200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr4:174126600-174163400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:174127000-174163600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:174127000-174163600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:174128200-174169200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:174131800-174168600	Weak transcription	Gastric	stomach
7	chr4:174140400-174163400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:174140400-174163600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:174140400-174163600	Weak transcription	Aorta	Aorta
10	chr4:174142200-174173400	Weak transcription	Lung	lung
11	chr4:174144200-174169000	Weak transcription	Fetal Intestine Large	intestine
12	chr4:174145800-174163800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:174145800-174163800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:174148000-174173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:174150200-174163800	Weak transcription	Psoas Muscle	Psoas
16	chr4:174150200-174173400	Weak transcription	Small Intestine	intestine
17	chr4:174151200-174163200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:174151400-174163000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:174151400-174171000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr4:174152600-174160600	Weak transcription	Fetal Brain Male	brain
21	chr4:174152600-174173400	Weak transcription	Left Ventricle	heart
22	chr4:174153000-174169200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr4:174153600-174171000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:174153800-174162800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:174154400-174163200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:174155800-174164000	Weak transcription	NHLF	lung
27	chr4:174156000-174163600	Enhancers	Dnd41	blood
28	chr4:174156200-174163800	Weak transcription	GM12878-XiMat	blood
29	chr4:174156600-174165000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:174156600-174169000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:174156800-174162800	Weak transcription	Primary T cells from cord blood	blood
32	chr4:174156800-174165000	Weak transcription	Primary B cells from cord blood	blood
33	chr4:174156800-174169000	Weak transcription	Fetal Intestine Small	intestine
34	chr4:174157000-174160800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr4:174157000-174160800	Enhancers	Brain Anterior Caudate	brain
36	chr4:174157000-174161000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr4:174157000-174166800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr4:174157200-174161200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr4:174157400-174166600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr4:174157400-174171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:174157800-174160000	Enhancers	Brain Germinal Matrix	brain
42	chr4:174157800-174160600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:174157800-174160600	Weak transcription	Brain Angular Gyrus	brain
44	chr4:174158000-174163600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:174158000-174163600	Weak transcription	Stomach Mucosa	stomach
46	chr4:174158000-174169000	Weak transcription	Fetal Stomach	stomach
47	chr4:174158000-174169200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:174158200-174172600	Weak transcription	K562	blood
49	chr4:174158600-174160400	Weak transcription	Fetal Thymus	thymus
50	chr4:174158600-174163600	Weak transcription	HMEC	breast

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