Variant report

Variant	rs73871519
Chromosome Location	chr4:165800276-165800277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55700483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56396348	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57082797	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57145749	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58736645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60409586	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60792788	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871520	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871521	1.00[AMR][1000 genomes]
rs73871522	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871524	1.00[AMR][1000 genomes]
rs73871525	1.00[AMR][1000 genomes]
rs73871526	1.00[AMR][1000 genomes]
rs73871527	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461821	chr4:165402309-165859951	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv596037	chr4:165402309-165859951	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1019150	chr4:165505585-165907924	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv881303	chr4:165746041-165809314	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv881399	chr4:165754241-165833645	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv2760864	chr4:165771791-165835433	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
10	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv880382	chr4:165793001-165964290	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165797600-165801600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr4:165797800-165800400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr4:165797800-165800800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:165798200-165800400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:165798400-165800600	Weak transcription	Pancreas	Pancrea
6	chr4:165798600-165801000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:165798800-165809400	Weak transcription	Fetal Lung	lung
8	chr4:165799400-165803000	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
9	chr4:165799600-165801200	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:165799800-165802000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
11	chr4:165799800-165802200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:165799800-165803000	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
13	chr4:165799800-165803000	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
14	chr4:165800000-165800600	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
15	chr4:165800000-165800600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:165800000-165800600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:165800000-165801400	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
18	chr4:165800200-165801400	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
19	chr4:165800200-165802200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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