Variant report

Variant	rs73873120
Chromosome Location	chr3:155027190-155027191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10513475	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12485271	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12490500	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1485238	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1564853	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16824794	0.85[ASN][1000 genomes]
rs16824800	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16824813	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16824819	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16824822	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2291356	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2291358	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs55790938	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56305902	0.85[ASN][1000 genomes]
rs56981924	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58985536	0.85[ASN][1000 genomes]
rs60635277	0.85[ASN][1000 genomes]
rs73873112	0.85[ASN][1000 genomes]
rs73873118	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73873125	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155020600-155027400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:155025800-155027200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:155026600-155027200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:155026600-155027200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:155027000-155029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:155027000-155030000	Weak transcription	NHDF-Ad	bronchial

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