Variant report

Variant	rs73873136
Chromosome Location	chr3:155043582-155043583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56248709	0.94[EUR][1000 genomes]
rs57333732	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv3353459	chr3:155040657-155049561	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv236488	chr3:155040676-155049559	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155037200-155043800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:155039600-155044800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:155040400-155044000	Weak transcription	K562	blood
4	chr3:155043200-155043800	Active TSS	Duodenum Mucosa	Duodenum
5	chr3:155043200-155043800	Active TSS	HepG2	liver
6	chr3:155043200-155044000	Active TSS	Hela-S3	cervix
7	chr3:155043400-155043600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:155043400-155043800	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr3:155043400-155043800	Active TSS	Colonic Mucosa	Colon
10	chr3:155043400-155043800	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr3:155043400-155043800	Active TSS	Pancreas	Pancrea
12	chr3:155043400-155043800	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr3:155043400-155043800	Active TSS	Stomach Smooth Muscle	stomach
14	chr3:155043400-155043800	Active TSS	A549	lung
15	chr3:155043400-155044000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:155043400-155044200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:155043400-155045400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:155043400-155045600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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