Variant report

Variant	rs73873352
Chromosome Location	chr4:186662229-186662230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73873368	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432684	chr4:186412851-186742851	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1020731	chr4:186512433-186724031	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1023412	chr4:186613289-186707428	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv537421	chr4:186613289-186707428	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv427702	chr4:186618031-186782377	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186655200-186701400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:186655800-186667600	Weak transcription	Fetal Intestine Small	intestine
3	chr4:186656200-186676200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:186657200-186662400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:186657400-186663800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:186657600-186662400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:186658200-186663600	Weak transcription	Stomach Mucosa	stomach
8	chr4:186659400-186663000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:186659600-186663800	Weak transcription	NH-A	brain
10	chr4:186659600-186664000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:186659600-186664200	Weak transcription	HSMM	muscle
12	chr4:186659600-186667200	Enhancers	Liver	Liver
13	chr4:186660200-186670200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:186660400-186663200	Weak transcription	Osteobl	bone
15	chr4:186660400-186663600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:186660400-186664600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:186660400-186678000	Weak transcription	HSMMtube	muscle
18	chr4:186660600-186668400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:186660800-186676000	Weak transcription	HUVEC	blood vessel
20	chr4:186661000-186663800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:186661200-186662400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr4:186661200-186664800	Enhancers	Pancreas	Pancrea
23	chr4:186661400-186663200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:186661400-186694600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:186661600-186663400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:186661600-186663800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:186661600-186664000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr4:186661600-186668600	Weak transcription	Fetal Brain Female	brain
29	chr4:186661600-186672400	Weak transcription	Fetal Kidney	kidney
30	chr4:186661800-186663000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:186661800-186663200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:186661800-186663400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:186661800-186663800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr4:186661800-186666400	Enhancers	HepG2	liver
35	chr4:186662000-186663000	Weak transcription	Ovary	ovary
36	chr4:186662000-186666200	Weak transcription	Spleen	Spleen
37	chr4:186662000-186668000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr4:186662200-186662400	Enhancers	GM12878-XiMat	blood
39	chr4:186662200-186663000	Weak transcription	Left Ventricle	heart
40	chr4:186662200-186663000	Weak transcription	Right Ventricle	heart
41	chr4:186662200-186663200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr4:186662200-186663200	Weak transcription	Colon Smooth Muscle	Colon
43	chr4:186662200-186663400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr4:186662200-186663400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:186662200-186663400	Enhancers	Fetal Heart	heart
46	chr4:186662200-186663600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr4:186662200-186663800	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr4:186662200-186664000	Weak transcription	Fetal Stomach	stomach
49	chr4:186662200-186664000	Weak transcription	Gastric	stomach
50	chr4:186662200-186666000	Weak transcription	Right Atrium	heart

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