Variant report

Variant	rs73873373
Chromosome Location	chr4:186695942-186695943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDLIM3-6	chr4:186695099-186696520	NONHSAT099627

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11937003	1.00[AMR][1000 genomes]
rs58973669	1.00[AMR][1000 genomes]
rs73873362	1.00[AMR][1000 genomes]
rs73873365	1.00[AMR][1000 genomes]
rs73873366	1.00[AMR][1000 genomes]
rs73873367	1.00[AMR][1000 genomes]
rs73873370	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432684	chr4:186412851-186742851	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1020731	chr4:186512433-186724031	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1023412	chr4:186613289-186707428	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv537421	chr4:186613289-186707428	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv427702	chr4:186618031-186782377	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	nsv1015931	chr4:186683165-186734480	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186655200-186701400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:186673000-186714000	Weak transcription	Ovary	ovary
3	chr4:186680600-186702600	Weak transcription	Gastric	stomach
4	chr4:186693200-186696400	Active TSS	Adipose Nuclei	Adipose
5	chr4:186693200-186697000	Active TSS	Right Ventricle	heart
6	chr4:186693400-186697000	Flanking Active TSS	Osteobl	bone
7	chr4:186693400-186702600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:186693600-186697000	Active TSS	Right Atrium	heart
9	chr4:186693800-186696600	Active TSS	Left Ventricle	heart
10	chr4:186693800-186697000	Active TSS	Aorta	Aorta
11	chr4:186694000-186696600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr4:186694000-186696800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr4:186694200-186696000	Flanking Active TSS	Fetal Heart	heart
14	chr4:186694200-186696600	Active TSS	Stomach Smooth Muscle	stomach
15	chr4:186694400-186696600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr4:186694400-186696800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:186694400-186696800	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr4:186694400-186697000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:186694400-186697200	Enhancers	Stomach Mucosa	stomach
20	chr4:186694600-186696400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr4:186694600-186696600	Active TSS	H9 Cell Line	embryonic stem cell
22	chr4:186694600-186696800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:186694800-186696000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr4:186694800-186696000	Flanking Active TSS	HepG2	liver
25	chr4:186694800-186696400	Active TSS	Liver	Liver
26	chr4:186694800-186696600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:186694800-186696600	Active TSS	Brain Anterior Caudate	brain
28	chr4:186694800-186696600	Active TSS	HSMMtube	muscle
29	chr4:186694800-186696800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:186695000-186696000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:186695000-186696000	Weak transcription	Brain Angular Gyrus	brain
32	chr4:186695000-186696600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:186695000-186696600	Active TSS	HUVEC	blood vessel
34	chr4:186695000-186696800	Active TSS	Pancreas	Pancrea
35	chr4:186695000-186697400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:186695000-186697400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:186695000-186697600	Enhancers	Fetal Lung	lung
38	chr4:186695000-186699400	Weak transcription	Placenta	Placenta
39	chr4:186695000-186709000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr4:186695200-186696000	Active TSS	Psoas Muscle	Psoas
41	chr4:186695200-186696600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr4:186695200-186696600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:186695200-186696800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr4:186695200-186697600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:186695400-186696000	Flanking Active TSS	Hela-S3	cervix
46	chr4:186695400-186696200	Active TSS	Colon Smooth Muscle	Colon
47	chr4:186695400-186696400	Active TSS	H1 Cell Line	embryonic stem cell
48	chr4:186695400-186696600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr4:186695400-186696600	Active TSS	Fetal Muscle Trunk	muscle
50	chr4:186695400-186696600	Active TSS	Fetal Muscle Leg	muscle

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