Variant report

Variant	rs73873675
Chromosome Location	chr4:187567539-187567540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:187555929..187557695-chr4:187565571..187567581,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55663302	1.00[AMR][1000 genomes]
rs56309540	1.00[AMR][1000 genomes]
rs59997667	1.00[AMR][1000 genomes]
rs60796512	1.00[AMR][1000 genomes]
rs73873696	1.00[AMR][1000 genomes]
rs73873697	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025088	chr4:187407683-187674585	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1025244	chr4:187419770-188284813	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1034212	chr4:187437895-188030805	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv537438	chr4:187437895-188030805	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1015619	chr4:187442453-187595058	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1023800	chr4:187444255-187593799	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv532745	chr4:187471692-188205443	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv1022262	chr4:187475862-187848284	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1024705	chr4:187534005-187849091	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1026970	chr4:187537418-187913351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv596440	chr4:187538133-187848075	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187508200-187572600	Weak transcription	Psoas Muscle	Psoas
2	chr4:187552800-187569800	Weak transcription	Lung	lung
3	chr4:187552800-187572400	Weak transcription	Right Ventricle	heart
4	chr4:187555000-187569800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:187555000-187572600	Weak transcription	Aorta	Aorta
6	chr4:187556200-187571800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:187556200-187577600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:187556400-187572800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:187556800-187573800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:187557400-187572800	Weak transcription	Esophagus	oesophagus
11	chr4:187557600-187568000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:187557800-187569000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:187557800-187572600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:187558000-187572800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:187560800-187569200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr4:187560800-187581000	Weak transcription	Colonic Mucosa	Colon
17	chr4:187561000-187570200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:187563000-187572400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:187563200-187572600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:187564000-187568200	Weak transcription	HSMMtube	muscle
21	chr4:187564000-187572400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:187564000-187572400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:187564200-187568800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:187564400-187569600	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:187564400-187572400	Weak transcription	Stomach Mucosa	stomach
26	chr4:187564800-187568000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:187564800-187569200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:187564800-187572600	Weak transcription	Fetal Stomach	stomach
29	chr4:187565000-187572600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr4:187565000-187572600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:187565400-187574000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr4:187566200-187568800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:187566200-187569000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:187566200-187569000	Weak transcription	Fetal Kidney	kidney
35	chr4:187566200-187572400	Weak transcription	Brain Substantia Nigra	brain
36	chr4:187566200-187572600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:187566200-187572800	Weak transcription	Colon Smooth Muscle	Colon
38	chr4:187566400-187568000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:187566400-187568000	Weak transcription	HSMM	muscle
40	chr4:187566400-187568200	Weak transcription	Fetal Intestine Large	intestine
41	chr4:187566400-187568200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:187566400-187568400	Weak transcription	NHEK	skin
43	chr4:187566400-187568800	Weak transcription	NHDF-Ad	bronchial
44	chr4:187566400-187569800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:187566400-187569800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:187566400-187569800	Weak transcription	Adipose Nuclei	Adipose
47	chr4:187566400-187569800	Weak transcription	Fetal Intestine Small	intestine
48	chr4:187566400-187569800	Weak transcription	Fetal Lung	lung
49	chr4:187566400-187570600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr4:187566400-187571200	Weak transcription	Liver	Liver

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