Variant report

Variant	rs73874106
Chromosome Location	chr3:143728578-143728579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57585973	0.92[AFR][1000 genomes]
rs73871118	1.00[AMR][1000 genomes]
rs73871124	1.00[AMR][1000 genomes]
rs73871125	1.00[AMR][1000 genomes]
rs73874104	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73874108	0.92[AFR][1000 genomes]
rs73874109	0.92[AFR][1000 genomes]
rs73874112	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73874113	1.00[AMR][1000 genomes]
rs73875508	1.00[AMR][1000 genomes]
rs73875509	1.00[AMR][1000 genomes]
rs7619502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7623777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143697000-143729200	Weak transcription	Aorta	Aorta
2	chr3:143699200-143737600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:143708000-143729200	Weak transcription	Ovary	ovary
4	chr3:143708800-143729200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:143709200-143729000	Weak transcription	Fetal Lung	lung
6	chr3:143712000-143728600	Weak transcription	Left Ventricle	heart
7	chr3:143717600-143729400	Weak transcription	NH-A	brain
8	chr3:143722600-143729400	Weak transcription	HSMM	muscle
9	chr3:143726000-143729400	Enhancers	Brain Hippocampus Middle	brain
10	chr3:143727400-143730800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:143728000-143729400	Weak transcription	Brain Angular Gyrus	brain
12	chr3:143728000-143731600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:143728400-143729400	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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