Variant report

Variant	rs73874498
Chromosome Location	chr3:154798344-154798345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:154797505-154798984	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:154797463-154798344	MCF10A-Er-Src	breast:	n/a	n/a
3	BACH1	chr3:154797474-154798778	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAFK	chr3:154798259-154799035	IMR90	lung:	n/a	chr3:154798616-154798627 chr3:154798607-154798627 chr3:154798610-154798624 chr3:154798616-154798627 chr3:154798612-154798627 chr3:154798609-154798625
5	TAF1	chr3:154797595-154798499	SK-N-SH	brain:	n/a	n/a
6	MAFK	chr3:154798010-154798784	H1-hESC	embryonic stem cell:	n/a	chr3:154798616-154798627 chr3:154798607-154798627 chr3:154798610-154798624 chr3:154798616-154798627 chr3:154798612-154798627 chr3:154798609-154798625
7	POLR2A	chr3:154796309-154799404	SK-N-SH	brain:	n/a	n/a
8	JUND	chr3:154797967-154798575	K562	blood:	n/a	n/a
9	EP300	chr3:154797065-154798444	SK-N-SH	brain:	n/a	chr3:154798003-154798019 chr3:154798232-154798246 chr3:154798229-154798243 chr3:154797392-154797408 chr3:154797900-154797916
10	JUND	chr3:154797908-154798491	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr3:154795817-154801378	SK-N-SH	brain:	n/a	n/a
12	RCOR1	chr3:154797467-154798544	K562	blood:	n/a	n/a

Variant related genes	Relation type
MME	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16824536	1.00[ASN][1000 genomes]
rs34876701	1.00[ASN][1000 genomes]
rs4414806	1.00[ASN][1000 genomes]
rs58007166	1.00[ASN][1000 genomes]
rs60339637	1.00[ASN][1000 genomes]
rs61057682	1.00[ASN][1000 genomes]
rs6769341	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874487	1.00[ASN][1000 genomes]
rs73874491	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv963491	chr3:154795648-154803797	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3325286	chr3:154796483-154799031	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154796000-154802200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:154796200-154799600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:154796200-154799600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:154796400-154799000	Active TSS	Placenta Amnion	Placenta Amnion
5	chr3:154796400-154799200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr3:154796400-154800000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:154796400-154800000	Active TSS	NHLF	lung
8	chr3:154796600-154798400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr3:154796600-154798400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:154796600-154798400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr3:154796600-154798600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr3:154796600-154798600	Active TSS	Thymus	Thymus
13	chr3:154796600-154798600	Active TSS	HSMM	muscle
14	chr3:154796600-154798800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr3:154796600-154798800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:154796600-154798800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:154796600-154798800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:154796600-154798800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:154796600-154799000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr3:154796600-154799000	Active TSS	H9 Cell Line	embryonic stem cell
21	chr3:154796600-154799000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:154796600-154799000	Active TSS	Placenta	Placenta
23	chr3:154796600-154799200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:154796600-154800000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:154796600-154800200	Active TSS	Psoas Muscle	Psoas
26	chr3:154796600-154800600	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr3:154796600-154802000	Active TSS	Duodenum Mucosa	Duodenum
28	chr3:154796800-154798400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
29	chr3:154796800-154798600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:154796800-154798600	Bivalent/Poised TSS	Fetal Brain Female	brain
31	chr3:154796800-154798600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
32	chr3:154796800-154798800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
33	chr3:154796800-154798800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
34	chr3:154796800-154798800	Bivalent/Poised TSS	NH-A	brain
35	chr3:154796800-154799400	Active TSS	NHDF-Ad	bronchial
36	chr3:154796800-154799600	Active TSS	Muscle Satellite Cultured Cells	--
37	chr3:154796800-154801200	Active TSS	Fetal Kidney	kidney
38	chr3:154797000-154798400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:154797000-154798400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
40	chr3:154797000-154798800	Active TSS	H1 Cell Line	embryonic stem cell
41	chr3:154797000-154798800	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr3:154797000-154798800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
43	chr3:154797000-154799000	Active TSS	HSMMtube	muscle
44	chr3:154797000-154799600	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr3:154797200-154798400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:154797200-154798400	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr3:154797200-154798400	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr3:154797200-154798400	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr3:154797200-154798400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
50	chr3:154797200-154798400	Active TSS	Fetal Lung	lung

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