Variant report

Variant	rs73875969
Chromosome Location	chr3:161693365-161693366
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58454904	1.00[AMR][1000 genomes]
rs59116586	1.00[AMR][1000 genomes]
rs6772107	1.00[AMR][1000 genomes]
rs73875903	1.00[AMR][1000 genomes]
rs73875907	1.00[AMR][1000 genomes]
rs73875922	1.00[AMR][1000 genomes]
rs73875941	1.00[AMR][1000 genomes]
rs73875960	1.00[AMR][1000 genomes]
rs73875961	1.00[AMR][1000 genomes]
rs73875968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161691600-161693400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr3:161691800-161693400	Enhancers	Fetal Muscle Leg	muscle
3	chr3:161693000-161693400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:161693200-161693400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:161693200-161693400	Enhancers	Osteobl	bone
6	chr3:161693200-161695400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:161693200-161696800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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