Variant report
| Variant | rs73877443 |
|---|---|
| Chromosome Location | chr3:161375972-161375973 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:161373878..161376279-chr3:161388444..161390253,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1515740 | 1.00[ASN][1000 genomes] |
| rs16833044 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56343068 | 1.00[ASN][1000 genomes] |
| rs57595794 | 1.00[ASN][1000 genomes] |
| rs58467439 | 1.00[ASN][1000 genomes] |
| rs60394340 | 1.00[ASN][1000 genomes] |
| rs6773885 | 1.00[AMR][1000 genomes] |
| rs6790280 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6801613 | 1.00[AMR][1000 genomes] |
| rs73875667 | 1.00[ASN][1000 genomes] |
| rs73875678 | 1.00[ASN][1000 genomes] |
| rs73877420 | 1.00[ASN][1000 genomes] |
| rs73877422 | 1.00[ASN][1000 genomes] |
| rs73877425 | 1.00[ASN][1000 genomes] |
| rs73877430 | 1.00[ASN][1000 genomes] |
| rs73877431 | 1.00[ASN][1000 genomes] |
| rs73877434 | 1.00[ASN][1000 genomes] |
| rs73877435 | 1.00[ASN][1000 genomes] |
| rs73877437 | 1.00[ASN][1000 genomes] |
| rs73877438 | 1.00[ASN][1000 genomes] |
| rs73877442 | 1.00[AMR][1000 genomes] |
| rs7617043 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829774 | chr3:161229405-161386919 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2422309 | chr3:161242389-161425932 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv877711 | chr3:161275848-161486665 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004255 | chr3:161340249-161476537 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161374800-161376000 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 2 | chr3:161375400-161378400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
