Variant report

Variant	rs73877450
Chromosome Location	chr3:161392835-161392836
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56249588	1.00[AMR][1000 genomes]
rs56723172	1.00[AMR][1000 genomes]
rs58454904	1.00[AMR][1000 genomes]
rs59116586	1.00[AMR][1000 genomes]
rs61298814	1.00[AMR][1000 genomes]
rs73875633	1.00[AMR][1000 genomes]
rs73875903	1.00[AMR][1000 genomes]
rs73875907	1.00[AMR][1000 genomes]
rs73875922	1.00[AMR][1000 genomes]
rs73877428	1.00[AMR][1000 genomes]
rs73877436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161380000-161393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:161390200-161393200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:161390200-161393400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:161390200-161393600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:161390200-161394000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:161390400-161393200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:161390400-161394200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:161390600-161393800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:161390800-161393000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:161390800-161393200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:161392200-161393200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:161392600-161393000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:161392600-161398200	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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