Variant report

Variant	rs73880369
Chromosome Location	chr22:28409220-28409221
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28312284..28315668-chr22:28406606..28409523,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180957	Chromatin interaction
ENSG00000235954	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58519712	0.83[AFR][1000 genomes]
rs73880343	0.83[AFR][1000 genomes]
rs73880346	0.83[AFR][1000 genomes]
rs73880373	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28381800-28412400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr22:28386200-28416000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr22:28389200-28410000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr22:28389200-28413000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:28390000-28414600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr22:28390400-28416200	Weak transcription	Colonic Mucosa	Colon
7	chr22:28394800-28414000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:28395000-28416400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr22:28395600-28413000	Weak transcription	Pancreas	Pancrea
10	chr22:28396000-28422400	Weak transcription	Primary T cells from cord blood	blood
11	chr22:28397200-28409400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr22:28397200-28423000	Weak transcription	HepG2	liver
13	chr22:28397400-28412000	Weak transcription	Placenta	Placenta
14	chr22:28399400-28425800	Weak transcription	Liver	Liver
15	chr22:28400800-28410200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr22:28401600-28412000	Weak transcription	Thymus	Thymus
17	chr22:28401800-28410400	Weak transcription	Fetal Thymus	thymus
18	chr22:28402400-28409600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr22:28405200-28414000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr22:28405400-28412400	Weak transcription	Brain Hippocampus Middle	brain
21	chr22:28405400-28415000	Weak transcription	HSMM	muscle
22	chr22:28405400-28416200	Weak transcription	NHDF-Ad	bronchial
23	chr22:28405400-28416200	Weak transcription	NHLF	lung
24	chr22:28405400-28416400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr22:28405400-28416400	Weak transcription	Fetal Kidney	kidney
26	chr22:28405600-28412400	Weak transcription	Brain Anterior Caudate	brain
27	chr22:28405600-28414800	Weak transcription	HSMMtube	muscle
28	chr22:28405800-28409400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr22:28405800-28410000	Weak transcription	Fetal Brain Male	brain
30	chr22:28405800-28411400	Strong transcription	Fetal Intestine Small	intestine
31	chr22:28405800-28414000	Weak transcription	Psoas Muscle	Psoas
32	chr22:28405800-28416000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr22:28405800-28416200	Weak transcription	Left Ventricle	heart
34	chr22:28406200-28409800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr22:28406200-28410800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr22:28406200-28411200	Strong transcription	Fetal Stomach	stomach
37	chr22:28406600-28410600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr22:28406800-28411000	Strong transcription	Ovary	ovary
39	chr22:28406800-28411800	Weak transcription	Fetal Heart	heart
40	chr22:28407400-28409800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr22:28407400-28410400	Strong transcription	Aorta	Aorta
42	chr22:28407600-28409800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr22:28407600-28410800	Strong transcription	Adipose Nuclei	Adipose
44	chr22:28407600-28411000	Strong transcription	Fetal Intestine Large	intestine
45	chr22:28407600-28411800	Strong transcription	Dnd41	blood
46	chr22:28407800-28409800	Strong transcription	Fetal Brain Female	brain
47	chr22:28407800-28410000	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr22:28407800-28410200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr22:28407800-28410400	Strong transcription	Lung	lung
50	chr22:28408000-28410200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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