Variant report

Variant	rs73881187
Chromosome Location	chr22:29321938-29321939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29315873..29318298-chr22:29320072..29322086,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11912894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11913224	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11913805	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882995	1.00[EUR][1000 genomes]
rs55665300	1.00[EUR][1000 genomes]
rs55945584	1.00[EUR][1000 genomes]
rs56089216	1.00[EUR][1000 genomes]
rs56332784	1.00[EUR][1000 genomes]
rs56728146	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57119189	1.00[EUR][1000 genomes]
rs57188271	1.00[EUR][1000 genomes]
rs57198336	1.00[EUR][1000 genomes]
rs57846969	1.00[EUR][1000 genomes]
rs58089713	1.00[EUR][1000 genomes]
rs58162235	1.00[EUR][1000 genomes]
rs58221763	1.00[EUR][1000 genomes]
rs59519868	1.00[EUR][1000 genomes]
rs59546292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60003056	1.00[EUR][1000 genomes]
rs6005942	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60187407	1.00[EUR][1000 genomes]
rs60747358	1.00[EUR][1000 genomes]
rs60780652	1.00[EUR][1000 genomes]
rs61257487	1.00[EUR][1000 genomes]
rs61581392	1.00[EUR][1000 genomes]
rs722590	1.00[EUR][1000 genomes]
rs7287244	1.00[EUR][1000 genomes]
rs73881189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73881197	1.00[EUR][1000 genomes]
rs73881200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73881201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73882404	1.00[EUR][1000 genomes]
rs73882405	1.00[EUR][1000 genomes]
rs73882406	1.00[EUR][1000 genomes]
rs73882414	1.00[EUR][1000 genomes]
rs73882422	1.00[EUR][1000 genomes]
rs73882424	1.00[EUR][1000 genomes]
rs73882428	1.00[EUR][1000 genomes]
rs73882440	1.00[EUR][1000 genomes]
rs73882443	1.00[EUR][1000 genomes]
rs73882445	1.00[EUR][1000 genomes]
rs73882447	1.00[EUR][1000 genomes]
rs73882449	1.00[EUR][1000 genomes]
rs8138963	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29314400-29342800	Weak transcription	Brain Substantia Nigra	brain
2	chr22:29314800-29328400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:29315200-29326400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:29315800-29325000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr22:29316400-29322600	Enhancers	Fetal Lung	lung
6	chr22:29316600-29322600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr22:29317200-29322000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:29317600-29325400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr22:29317800-29329400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr22:29318200-29326600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr22:29318600-29322000	Enhancers	Fetal Intestine Large	intestine
12	chr22:29318600-29322200	Enhancers	Fetal Kidney	kidney
13	chr22:29319400-29326200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr22:29320000-29322200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr22:29320000-29322400	Enhancers	Liver	Liver
16	chr22:29320200-29322200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr22:29320200-29322200	Enhancers	Brain Anterior Caudate	brain
18	chr22:29320200-29326400	Weak transcription	Aorta	Aorta
19	chr22:29320200-29326400	Weak transcription	Left Ventricle	heart
20	chr22:29320400-29322000	Enhancers	NHEK	skin
21	chr22:29320400-29322400	Genic enhancers	HepG2	liver
22	chr22:29320400-29322800	Weak transcription	Fetal Stomach	stomach
23	chr22:29320400-29323000	Weak transcription	Colon Smooth Muscle	Colon
24	chr22:29320400-29323600	Weak transcription	Brain Germinal Matrix	brain
25	chr22:29320400-29325200	Weak transcription	Gastric	stomach
26	chr22:29320400-29325800	Weak transcription	A549	lung
27	chr22:29320400-29326400	Weak transcription	Fetal Heart	heart
28	chr22:29320400-29326600	Weak transcription	Brain Angular Gyrus	brain
29	chr22:29320400-29328800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr22:29320600-29322000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr22:29320600-29322400	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr22:29320600-29323400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr22:29320600-29323800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr22:29320600-29325200	Weak transcription	Lung	lung
35	chr22:29320600-29325600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr22:29320600-29326200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr22:29320600-29326400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr22:29320600-29326400	Weak transcription	Psoas Muscle	Psoas
39	chr22:29320600-29326400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr22:29320600-29326400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr22:29320600-29326600	Weak transcription	Fetal Brain Male	brain
42	chr22:29320600-29327600	Weak transcription	Esophagus	oesophagus
43	chr22:29320600-29330800	Weak transcription	Fetal Muscle Leg	muscle
44	chr22:29320600-29332200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr22:29320800-29322200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr22:29321000-29322000	Weak transcription	Pancreas	Pancrea
47	chr22:29321000-29322200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr22:29321000-29323200	Weak transcription	Placenta	Placenta
49	chr22:29321000-29326400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr22:29321000-29339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links