Variant report

Variant	rs73881393
Chromosome Location	chr22:32010637-32010638
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32006220..32009486-chr22:32009995..32012615,3	K562	blood:
2	chr22:32008021..32010737-chr22:32022618..32024504,2	MCF-7	breast:
3	chr22:31978403..31980751-chr22:32010248..32012118,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DRG1-5	chr22:32010372-32011265	NONHSAT084909
2	lnc-DRG1-5	chr22:32010153-32010846	NONHSAT084907

Variant related genes	Relation type
ENSG00000198089	Chromatin interaction
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10222293	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12167269	0.82[AFR][1000 genomes]
rs12170049	0.82[AFR][1000 genomes]
rs60117275	0.82[AFR][1000 genomes]
rs73881395	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv914980	chr22:31966274-32024980	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv517534	chr22:31977594-32024980	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv829176	chr22:31998223-32029556	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv1845516	chr22:32010436-32024552	Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31935800-32013200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr22:31949400-32014400	Weak transcription	Hela-S3	cervix
3	chr22:31957400-32016400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr22:31976200-32014800	Weak transcription	A549	lung
5	chr22:31976400-32014800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr22:31976400-32019200	Weak transcription	Fetal Brain Male	brain
7	chr22:31985600-32014000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:31985800-32012400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr22:31985800-32014400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr22:31985800-32014800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:31990400-32014200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr22:31993200-32013800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr22:31996400-32010800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr22:31996600-32011200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr22:31996600-32011800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr22:31996600-32012200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr22:31996600-32018200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr22:31996600-32020600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr22:31996800-32011600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr22:31997200-32012000	Strong transcription	Fetal Thymus	thymus
21	chr22:31997600-32011400	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr22:31998400-32015600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr22:31998600-32022000	Weak transcription	Fetal Kidney	kidney
24	chr22:31998800-32012200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr22:31999000-32011800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr22:31999000-32013800	Weak transcription	HMEC	breast
27	chr22:31999000-32014600	Weak transcription	NHDF-Ad	bronchial
28	chr22:31999400-32011400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr22:31999400-32011600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr22:31999400-32012800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr22:31999400-32014800	Weak transcription	NH-A	brain
32	chr22:31999600-32012200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr22:31999800-32012200	Weak transcription	Brain Substantia Nigra	brain
34	chr22:32000200-32014600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr22:32001200-32012000	Weak transcription	Brain Hippocampus Middle	brain
36	chr22:32001600-32011600	Weak transcription	Brain Germinal Matrix	brain
37	chr22:32001600-32012400	Weak transcription	NHEK	skin
38	chr22:32002600-32011600	Weak transcription	Primary B cells from cord blood	blood
39	chr22:32002600-32012400	Weak transcription	Stomach Mucosa	stomach
40	chr22:32003200-32013000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr22:32003600-32022000	Strong transcription	Dnd41	blood
42	chr22:32004400-32011800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr22:32004400-32012400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr22:32004600-32012400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr22:32004600-32013000	Weak transcription	Brain Angular Gyrus	brain
46	chr22:32005400-32013800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr22:32006000-32013800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr22:32006800-32015000	Weak transcription	Aorta	Aorta
49	chr22:32007200-32011200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr22:32007200-32011600	Weak transcription	HSMM	muscle

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