Variant report

Variant	rs73881921
Chromosome Location	chr22:33364497-33364498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16991632	1.00[AFR][1000 genomes]
rs55813771	1.00[AFR][1000 genomes]
rs58338477	0.95[AFR][1000 genomes]
rs73881908	0.95[AFR][1000 genomes]
rs73881937	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:33354000-33374000	Weak transcription	Brain Angular Gyrus	brain
5	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
6	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
7	chr22:33361000-33371400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr22:33361000-33380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr22:33361200-33368400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr22:33362200-33365800	Enhancers	Duodenum Mucosa	Duodenum
11	chr22:33362200-33365800	Enhancers	Fetal Intestine Small	intestine
12	chr22:33362200-33366400	Enhancers	Fetal Intestine Large	intestine
13	chr22:33362400-33365800	Enhancers	Liver	Liver
14	chr22:33362800-33364600	Enhancers	Fetal Kidney	kidney
15	chr22:33363000-33364800	Enhancers	Fetal Stomach	stomach
16	chr22:33363200-33364800	Enhancers	Stomach Smooth Muscle	stomach
17	chr22:33363200-33365800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr22:33363400-33364600	Enhancers	Colon Smooth Muscle	Colon
19	chr22:33363400-33365800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr22:33363400-33365800	Enhancers	Fetal Heart	heart
21	chr22:33363800-33364600	Enhancers	Pancreas	Pancrea
22	chr22:33363800-33365200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr22:33363800-33365400	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr22:33363800-33365600	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr22:33363800-33366800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr22:33364000-33366400	Enhancers	HepG2	liver
27	chr22:33364000-33367800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr22:33364200-33366400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr22:33364400-33364600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr22:33364400-33365000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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