Variant report

Variant	rs73882463
Chromosome Location	chr22:29505663-29505664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73882456	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882458	0.88[AFR][1000 genomes]
rs73882464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882473	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29483400-29550200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr22:29486600-29519000	Weak transcription	Fetal Brain Male	brain
3	chr22:29488400-29521200	Weak transcription	Lung	lung
4	chr22:29490000-29514000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr22:29490400-29508000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr22:29490400-29539800	Weak transcription	Psoas Muscle	Psoas
7	chr22:29491200-29521200	Weak transcription	Colonic Mucosa	Colon
8	chr22:29491600-29522200	Weak transcription	Liver	Liver
9	chr22:29493200-29511600	Weak transcription	Gastric	stomach
10	chr22:29493200-29521000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr22:29493200-29521200	Weak transcription	Pancreas	Pancrea
12	chr22:29493200-29536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr22:29493400-29516400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr22:29493800-29511600	Weak transcription	Fetal Heart	heart
15	chr22:29494600-29506000	Weak transcription	Left Ventricle	heart
16	chr22:29495000-29509200	Weak transcription	Fetal Brain Female	brain
17	chr22:29495200-29505800	Weak transcription	Adipose Nuclei	Adipose
18	chr22:29495200-29516600	Weak transcription	Esophagus	oesophagus
19	chr22:29498400-29505800	Weak transcription	Fetal Thymus	thymus
20	chr22:29498800-29509200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr22:29499400-29506000	Weak transcription	Thymus	Thymus
22	chr22:29499400-29508000	Weak transcription	Brain Angular Gyrus	brain
23	chr22:29499400-29508000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr22:29499400-29508000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr22:29499600-29506400	Weak transcription	Brain Anterior Caudate	brain
26	chr22:29499600-29507800	Weak transcription	Brain Substantia Nigra	brain
27	chr22:29499800-29507800	Weak transcription	Brain Hippocampus Middle	brain
28	chr22:29499800-29509600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr22:29503200-29506000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr22:29503200-29506600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr22:29503400-29507400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr22:29503600-29506600	Enhancers	Placenta	Placenta
33	chr22:29503800-29506400	Enhancers	NHDF-Ad	bronchial
34	chr22:29503800-29506600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr22:29504000-29505800	Enhancers	Placenta Amnion	Placenta Amnion
36	chr22:29504000-29506400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr22:29504200-29506400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr22:29504200-29507000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr22:29504200-29507000	Enhancers	K562	blood
40	chr22:29504400-29506400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr22:29504400-29506400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr22:29504800-29521800	Weak transcription	NHEK	skin
43	chr22:29505000-29506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr22:29505000-29514000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr22:29505000-29521000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr22:29505200-29506400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr22:29505400-29505800	Enhancers	Fetal Muscle Leg	muscle
48	chr22:29505400-29505800	Enhancers	Small Intestine	intestine
49	chr22:29505400-29506000	Enhancers	Duodenum Mucosa	Duodenum
50	chr22:29505400-29506000	Enhancers	Rectal Mucosa Donor 31	rectum

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