Variant report

Variant	rs73882491
Chromosome Location	chr22:29584009-29584010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59622409	0.82[AFR][1000 genomes]
rs60846306	0.92[AFR][1000 genomes]
rs73882494	0.94[AFR][1000 genomes]
rs73882497	0.94[AFR][1000 genomes]
rs73882498	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv524483	chr22:29525126-29630337	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3418371	chr22:29569447-29595319	Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29572800-29591000	Weak transcription	Spleen	Spleen
2	chr22:29576400-29591000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr22:29576600-29590400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr22:29576600-29591200	Weak transcription	Fetal Intestine Small	intestine
5	chr22:29577600-29591200	Weak transcription	Dnd41	blood
6	chr22:29579200-29590600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr22:29580600-29591000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:29581200-29591400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr22:29581400-29586200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr22:29581600-29598400	Weak transcription	Fetal Brain Female	brain
11	chr22:29583000-29584600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr22:29583600-29584200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr22:29583600-29584400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr22:29583800-29584400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr22:29583800-29584600	Enhancers	Fetal Muscle Leg	muscle
16	chr22:29583800-29588000	Enhancers	Fetal Brain Male	brain
17	chr22:29584000-29584200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr22:29584000-29584200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr22:29584000-29584200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr22:29584000-29584800	Enhancers	Brain Germinal Matrix	brain

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