Variant report

Variant	rs73882713
Chromosome Location	chr22:28632095-28632096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55857140	1.00[AFR][1000 genomes]
rs56113837	0.88[AFR][1000 genomes]
rs56185522	0.88[AFR][1000 genomes]
rs73880400	0.88[AFR][1000 genomes]
rs73882710	1.00[AFR][1000 genomes]
rs73882715	1.00[AFR][1000 genomes]
rs73882716	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28612200-28634800	Weak transcription	Dnd41	blood
2	chr22:28618400-28639600	Weak transcription	Ovary	ovary
3	chr22:28618400-28662200	Weak transcription	Pancreas	Pancrea
4	chr22:28620400-28639200	Weak transcription	Left Ventricle	heart
5	chr22:28628000-28639400	Weak transcription	Fetal Heart	heart
6	chr22:28628200-28643200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr22:28628600-28632800	Weak transcription	HSMMtube	muscle
8	chr22:28628600-28632800	Weak transcription	Osteobl	bone
9	chr22:28628600-28633000	Weak transcription	HSMM	muscle
10	chr22:28628600-28639000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr22:28628600-28640800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr22:28628600-28640800	Weak transcription	NHLF	lung
13	chr22:28630600-28633600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr22:28631400-28640800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr22:28631800-28632200	Enhancers	Brain Cingulate Gyrus	brain
16	chr22:28632000-28632400	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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