Variant report

Variant	rs73882904
Chromosome Location	chr3:178562207-178562208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11709071	0.83[ASN][1000 genomes]
rs11716970	0.83[ASN][1000 genomes]
rs11721205	0.83[ASN][1000 genomes]
rs11914342	0.83[ASN][1000 genomes]
rs11916314	0.83[ASN][1000 genomes]
rs11924270	0.84[ASN][1000 genomes]
rs11927700	0.83[ASN][1000 genomes]
rs11929676	0.83[ASN][1000 genomes]
rs13090876	0.83[ASN][1000 genomes]
rs28490096	0.83[ASN][1000 genomes]
rs28733874	0.83[ASN][1000 genomes]
rs4131862	0.83[ASN][1000 genomes]
rs4131863	0.83[ASN][1000 genomes]
rs60725021	0.83[ASN][1000 genomes]
rs6443582	0.82[ASN][1000 genomes]
rs6765556	0.81[ASN][1000 genomes]
rs6765682	0.81[ASN][1000 genomes]
rs6779867	0.83[ASN][1000 genomes]
rs6780023	0.83[ASN][1000 genomes]
rs6789905	0.81[ASN][1000 genomes]
rs6789945	0.81[ASN][1000 genomes]
rs6804163	0.83[ASN][1000 genomes]
rs73053720	0.83[ASN][1000 genomes]
rs73053731	0.81[ASN][1000 genomes]
rs73053734	0.83[ASN][1000 genomes]
rs73053748	0.83[ASN][1000 genomes]
rs9814677	0.83[ASN][1000 genomes]
rs9819352	0.83[ASN][1000 genomes]
rs9819394	0.83[ASN][1000 genomes]
rs9819671	0.83[ASN][1000 genomes]
rs9824836	0.83[ASN][1000 genomes]
rs9828010	0.83[ASN][1000 genomes]
rs9828148	0.83[ASN][1000 genomes]
rs9828153	0.83[ASN][1000 genomes]
rs9833798	0.81[ASN][1000 genomes]
rs9837702	0.83[ASN][1000 genomes]
rs9851600	0.80[ASN][1000 genomes]
rs9857760	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18827	chr3:178550206-178568168	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv592645	chr3:178550246-178568129	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv592646	chr3:178555598-178566442	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
2	chr3:178546400-178563000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:178550400-178562800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:178558800-178562800	Weak transcription	HSMM	muscle
5	chr3:178558800-178566800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:178559200-178562600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:178559200-178567600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:178559600-178562800	Weak transcription	Osteobl	bone
9	chr3:178559800-178566800	Weak transcription	Left Ventricle	heart
10	chr3:178560000-178562600	Weak transcription	HSMMtube	muscle
11	chr3:178562200-178563000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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