Variant report

Variant	rs73883427
Chromosome Location	chr3:179673884-179673885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59195034	1.00[AFR][1000 genomes]
rs59672007	1.00[AFR][1000 genomes]
rs60635140	0.81[AFR][1000 genomes]
rs73883412	1.00[AFR][1000 genomes]
rs73883413	1.00[AFR][1000 genomes]
rs73883414	1.00[AFR][1000 genomes]
rs73883415	1.00[AFR][1000 genomes]
rs73883420	1.00[AFR][1000 genomes]
rs73883423	1.00[AFR][1000 genomes]
rs73883425	1.00[AFR][1000 genomes]
rs73883429	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829807	chr3:179527567-179745153	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829808	chr3:179574614-179754321	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179660600-179680800	Weak transcription	Pancreas	Pancrea
2	chr3:179668000-179675200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:179671400-179674600	Enhancers	Fetal Thymus	thymus
4	chr3:179671800-179676400	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:179672200-179674400	Enhancers	Thymus	Thymus
6	chr3:179672200-179676000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:179672200-179679600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:179672800-179674400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:179672800-179674400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:179672800-179674800	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:179673200-179674200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:179673600-179674200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:179673600-179674400	Flanking Active TSS	Dnd41	blood
14	chr3:179673600-179675000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:179673600-179675800	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:179673800-179674000	Enhancers	Brain Substantia Nigra	brain
17	chr3:179673800-179674400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr3:179673800-179674400	Flanking Active TSS	GM12878-XiMat	blood
19	chr3:179673800-179675400	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links