Variant report

Variant	rs73883479
Chromosome Location	chr3:179758949-179758950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:179758859-179759045	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:179758779-179759072	MCF10A-Er-Src	breast:	n/a	n/a
3	NR3C1	chr3:179758827-179759150	A549	lung:	n/a	n/a
4	MYC	chr3:179758854-179759043	MCF10A-Er-Src	breast:	n/a	n/a
5	NR3C1	chr3:179758874-179759027	A549	lung:	n/a	n/a
6	STAT3	chr3:179758924-179759013	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr3:179758842-179759042	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr3:179758771-179758995	HepG2	liver:	n/a	chr3:179758907-179758918
9	FOS	chr3:179758779-179759114	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr3:179758771-179759091	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr3:179758841-179759117	MCF-7	breast:	n/a	chr3:179758907-179758918
12	NR3C1	chr3:179758688-179759147	A549	lung:	n/a	n/a
13	FOS	chr3:179758821-179759244	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
PEX5L	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11713683	0.80[ASN][1000 genomes]
rs13324196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13325101	0.84[ASN][1000 genomes]
rs13325206	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1522115	0.80[ASN][1000 genomes]
rs1529269	0.83[ASN][1000 genomes]
rs1851352	0.85[ASN][1000 genomes]
rs1851353	0.85[ASN][1000 genomes]
rs2204095	0.85[ASN][1000 genomes]
rs56397887	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57729381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59205301	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61623675	0.98[ASN][1000 genomes]
rs6443685	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6443687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6443688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787707	0.80[AMR][1000 genomes]
rs6788776	0.84[ASN][1000 genomes]
rs6797922	0.82[ASN][1000 genomes]
rs6800148	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73883446	0.83[AMR][1000 genomes]
rs73883462	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73883468	0.80[ASN][1000 genomes]
rs73883469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73883495	0.83[ASN][1000 genomes]
rs7615924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7630527	0.80[ASN][1000 genomes]
rs7640838	0.85[ASN][1000 genomes]
rs939824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs940522	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9809603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9823631	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9826864	0.84[ASN][1000 genomes]
rs9828423	0.83[ASN][1000 genomes]
rs9828621	0.94[ASN][1000 genomes]
rs9833738	0.98[ASN][1000 genomes]
rs9866193	0.83[ASN][1000 genomes]
rs9870941	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9881655	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534210	chr3:179666123-179899347	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1000756	chr3:179672703-179827373	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179758200-179759600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:179758400-179759400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:179758600-179759200	Enhancers	HMEC	breast

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