Variant report

Variant	rs73884436
Chromosome Location	chr22:31176135-31176136
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11912801	1.00[AMR][1000 genomes]
rs11914180	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55841013	0.86[AFR][1000 genomes]
rs56305932	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58922136	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60487986	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61688449	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6518715	0.84[AFR][1000 genomes]
rs6518716	0.86[AFR][1000 genomes]
rs6518717	0.86[AFR][1000 genomes]
rs7289229	1.00[AMR][1000 genomes]
rs7289612	0.86[AFR][1000 genomes]
rs73400354	1.00[AMR][1000 genomes]
rs73402248	0.92[AFR][1000 genomes]
rs8136970	0.81[AFR][1000 genomes]
rs8137788	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv2763260	chr22:31141521-31185000	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31140000-31185400	Weak transcription	Fetal Brain Female	brain
2	chr22:31160200-31177400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr22:31168000-31185400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr22:31172800-31189400	Weak transcription	Fetal Heart	heart
5	chr22:31173000-31176600	Weak transcription	Fetal Brain Male	brain
6	chr22:31173800-31177400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:31173800-31177400	Weak transcription	Brain Angular Gyrus	brain
8	chr22:31173800-31181600	Weak transcription	Spleen	Spleen
9	chr22:31173800-31198200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr22:31174600-31177200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr22:31174600-31177200	Weak transcription	HSMMtube	muscle
12	chr22:31174600-31177400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr22:31174600-31179800	Weak transcription	Fetal Intestine Small	intestine
14	chr22:31175200-31176600	Enhancers	Primary hematopoietic stem cells	blood
15	chr22:31175400-31176400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr22:31175400-31176400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr22:31175600-31176200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr22:31175600-31176600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr22:31175800-31176200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr22:31175800-31176200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr22:31175800-31176200	Enhancers	Brain Hippocampus Middle	brain
22	chr22:31175800-31176400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr22:31175800-31176400	Enhancers	Brain Substantia Nigra	brain
24	chr22:31175800-31176400	Enhancers	HSMM	muscle
25	chr22:31175800-31176600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr22:31176000-31176200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr22:31176000-31176200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr22:31176000-31176400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr22:31176000-31176400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr22:31176000-31176400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr22:31176000-31176400	Enhancers	Brain Anterior Caudate	brain
32	chr22:31176000-31176400	Enhancers	Brain Cingulate Gyrus	brain
33	chr22:31176000-31180400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links