Variant report

Variant	rs73890627
Chromosome Location	chr3:194756208-194756209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:194725745..194726464-chr3:194755646..194756245,2	MCF-7	breast:
2	chr3:194753094..194756657-chr3:194757763..194760608,3	K562	blood:
3	chr3:194450957..194452931-chr3:194755028..194757266,2	MCF-7	breast:
4	chr3:194755786..194756502-chr8:95077004..95077540,2	MCF-7	breast:
5	chr3:194722573..194723313-chr3:194755798..194756642,2	MCF-7	breast:
6	chr3:194755811..194756606-chr3:194827245..194827766,2	MCF-7	breast:
7	chr3:194403042..194403693-chr3:194755817..194756659,3	MCF-7	breast:
8	chr3:194722413..194723041-chr3:194755681..194756360,2	MCF-7	breast:
9	chr3:194755717..194756712-chr3:194826887..194827939,8	MCF-7	breast:

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56386553	1.00[AMR][1000 genomes]
rs6773392	1.00[AMR][1000 genomes]
rs6789088	1.00[AMR][1000 genomes]
rs6806859	1.00[AMR][1000 genomes]
rs6809483	1.00[AMR][1000 genomes]
rs73890636	1.00[AMR][1000 genomes]
rs73890648	1.00[AMR][1000 genomes]
rs73890650	1.00[AMR][1000 genomes]
rs73890665	1.00[AMR][1000 genomes]
rs73890666	1.00[AMR][1000 genomes]
rs73890713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948797	chr3:194232753-194789163	Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv1007697	chr3:194554814-195009930	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536873	chr3:194554814-195009930	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv997779	chr3:194687093-194885936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv536874	chr3:194687093-194885936	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1009796	chr3:194737333-195124248	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
7	esv1813153	chr3:194754532-194851746	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3439578	chr3:194755713-194758511	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:194747000-194757800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:194751000-194756600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:194752000-194756600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:194753000-194758600	Weak transcription	Right Atrium	heart
5	chr3:194754000-194761000	Weak transcription	Gastric	stomach
6	chr3:194754600-194757200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:194754800-194757000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr3:194755000-194757200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:194755000-194760000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:194755200-194756600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:194755200-194760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:194755400-194757400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:194755400-194757600	Weak transcription	HUVEC	blood vessel
14	chr3:194755600-194760000	Weak transcription	Liver	Liver
15	chr3:194755600-194760000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr3:194755800-194757400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr3:194755800-194757800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:194755800-194760000	Weak transcription	Stomach Mucosa	stomach
19	chr3:194756000-194756400	Enhancers	Hela-S3	cervix
20	chr3:194756000-194756600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
21	chr3:194756000-194756800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr3:194756200-194756400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:194756200-194760400	Weak transcription	Pancreas	Pancrea
24	chr3:194756200-194760400	Weak transcription	Spleen	Spleen

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