Variant report
| Variant | rs73890745 |
|---|---|
| Chromosome Location | chr21:15611073-15611074 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs2822443 | 0.87[ASN][1000 genomes] |
| rs2822513 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2822525 | 0.95[AMR][1000 genomes] |
| rs2822527 | 0.95[AMR][1000 genomes] |
| rs2822530 | 0.91[AMR][1000 genomes] |
| rs2822532 | 0.86[AMR][1000 genomes] |
| rs2822534 | 0.95[AMR][1000 genomes] |
| rs2822535 | 0.95[AMR][1000 genomes] |
| rs2822539 | 0.95[AMR][1000 genomes] |
| rs2822540 | 0.95[AMR][1000 genomes] |
| rs2822542 | 0.95[AMR][1000 genomes] |
| rs2822543 | 0.95[AMR][1000 genomes] |
| rs2822549 | 0.81[AMR][1000 genomes] |
| rs56352003 | 0.95[AMR][1000 genomes] |
| rs57559966 | 0.95[AMR][1000 genomes] |
| rs61389358 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62226933 | 0.87[ASN][1000 genomes] |
| rs62227525 | 0.82[AMR][1000 genomes] |
| rs62227529 | 0.91[AMR][1000 genomes] |
| rs62227530 | 0.91[AMR][1000 genomes] |
| rs62227532 | 0.91[AMR][1000 genomes] |
| rs62227533 | 0.91[AMR][1000 genomes] |
| rs62230068 | 0.86[AMR][1000 genomes] |
| rs73890756 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73890758 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73891691 | 0.95[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1058202 | chr21:14706767-15628668 | Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv869466 | chr21:15482572-15683385 | Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1056588 | chr21:15583231-15615520 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1066738 | chr21:15587815-15642948 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:15611000-15611200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
