Variant report

Variant	rs73890803
Chromosome Location	chr21:17614265-17614266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10211887	1.00[EUR][1000 genomes]
rs1492961	1.00[EUR][1000 genomes]
rs187018	1.00[EUR][1000 genomes]
rs239081	1.00[EUR][1000 genomes]
rs28815621	1.00[EUR][1000 genomes]
rs28816233	1.00[EUR][1000 genomes]
rs41417245	1.00[EUR][1000 genomes]
rs59959559	1.00[EUR][1000 genomes]
rs7278795	1.00[EUR][1000 genomes]
rs73893217	1.00[EUR][1000 genomes]
rs73893218	1.00[EUR][1000 genomes]
rs8129609	1.00[EUR][1000 genomes]
rs9974249	1.00[EUR][1000 genomes]
rs9976640	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432145	chr21:17559229-17628529	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17584400-17619400	Weak transcription	Hela-S3	cervix
2	chr21:17598000-17622200	Weak transcription	Ovary	ovary
3	chr21:17598000-17622400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr21:17606200-17622200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr21:17612600-17618800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr21:17613400-17614800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr21:17613600-17614600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr21:17613600-17614600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr21:17613800-17614400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr21:17613800-17614400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr21:17613800-17614400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr21:17613800-17614400	Enhancers	Brain Anterior Caudate	brain
13	chr21:17613800-17614400	Enhancers	Brain Cingulate Gyrus	brain
14	chr21:17613800-17614400	Enhancers	Fetal Brain Male	brain
15	chr21:17613800-17614600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr21:17613800-17614800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr21:17613800-17614800	Flanking Active TSS	HUVEC	blood vessel
18	chr21:17614000-17614400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr21:17614000-17614400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr21:17614000-17614400	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr21:17614000-17614400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr21:17614000-17614600	Active TSS	A549	lung
23	chr21:17614000-17614800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
24	chr21:17614000-17620600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr21:17614200-17614400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr21:17614200-17614400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
27	chr21:17614200-17614400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr21:17614200-17614800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr21:17614200-17615400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links