Variant report

Variant	rs73892646
Chromosome Location	chr21:16907543-16907544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2823332	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55806649	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892643	0.81[AFR][1000 genomes]
rs73892647	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892650	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73892651	1.00[AMR][1000 genomes]
rs8133505	1.00[AMR][1000 genomes]
rs8134247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3328396	chr21:16907496-16907807	Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16906600-16907800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:16906800-16907600	Enhancers	Primary B cells from peripheral blood	blood
3	chr21:16907400-16907600	Enhancers	Primary B cells from cord blood	blood
4	chr21:16907400-16908200	Enhancers	Primary hematopoietic stem cells	blood
5	chr21:16907400-16908200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr21:16907400-16909400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr21:16907400-16909400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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