Variant report

Variant	rs73892954
Chromosome Location	chr21:17701271-17701272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11911658	1.00[ASN][1000 genomes]
rs239027	1.00[ASN][1000 genomes]
rs73892951	0.87[ASN][1000 genomes]
rs73892955	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17692000-17703000	Weak transcription	Ovary	ovary
2	chr21:17694400-17701800	Weak transcription	Hela-S3	cervix
3	chr21:17696800-17702600	Weak transcription	Osteobl	bone
4	chr21:17697600-17702600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr21:17697600-17703000	Weak transcription	Fetal Brain Female	brain
6	chr21:17697800-17702600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr21:17700400-17701800	Enhancers	Dnd41	blood
8	chr21:17700800-17703600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr21:17701000-17702600	Enhancers	Brain Anterior Caudate	brain
10	chr21:17701000-17703200	Enhancers	Brain Substantia Nigra	brain
11	chr21:17701000-17703600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr21:17701200-17701400	Enhancers	Brain Hippocampus Middle	brain
13	chr21:17701200-17701400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr21:17701200-17701400	Enhancers	Fetal Muscle Leg	muscle
15	chr21:17701200-17701600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr21:17701200-17702400	Weak transcription	Brain Angular Gyrus	brain
17	chr21:17701200-17703400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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