Variant report

Variant	rs73894918
Chromosome Location	chr21:16535340-16535341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73891997	1.00[AFR][1000 genomes]
rs73894919	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16528000-16536600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr21:16528200-16536800	Weak transcription	Fetal Heart	heart
3	chr21:16530000-16535400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr21:16532200-16536600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr21:16532600-16535600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr21:16533000-16536800	Weak transcription	Stomach Mucosa	stomach
7	chr21:16533400-16536600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr21:16533600-16537000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr21:16534200-16536600	Weak transcription	Pancreas	Pancrea
10	chr21:16535000-16536000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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