Variant report

Variant	rs73897887
Chromosome Location	chr20:15740110-15740111
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55784451	0.86[AFR][1000 genomes]
rs59808387	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6105463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61135902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7265613	1.00[EUR][1000 genomes]
rs73897889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73900207	1.00[EUR][1000 genomes]
rs73900238	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900239	0.93[AFR][1000 genomes]
rs73900240	0.87[AMR][1000 genomes]
rs8124304	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8124410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv912792	chr20:15724399-15749292	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv458934	chr20:15738086-15772582	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv585641	chr20:15738086-15772582	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv585642	chr20:15738086-15772876	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15736800-15740800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr20:15737000-15740400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:15737400-15740200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:15737400-15740400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr20:15737600-15740200	Weak transcription	Brain Substantia Nigra	brain
6	chr20:15737800-15740200	Weak transcription	Brain Hippocampus Middle	brain
7	chr20:15737800-15740200	Weak transcription	Fetal Brain Female	brain
8	chr20:15739600-15741600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr20:15739800-15740200	Weak transcription	Fetal Muscle Leg	muscle
10	chr20:15740000-15740200	Enhancers	Brain Cingulate Gyrus	brain
11	chr20:15740000-15740200	Enhancers	Stomach Smooth Muscle	stomach
12	chr20:15740000-15740400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr20:15740000-15740400	Enhancers	Colon Smooth Muscle	Colon
14	chr20:15740000-15740600	Enhancers	NHDF-Ad	bronchial
15	chr20:15740000-15741000	Enhancers	Fetal Stomach	stomach
16	chr20:15740000-15741400	Enhancers	Brain Angular Gyrus	brain
17	chr20:15740000-15741400	Enhancers	Brain Germinal Matrix	brain
18	chr20:15740000-15741400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr20:15740000-15741600	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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