Variant report

Variant	rs73898269
Chromosome Location	chr21:27944806-27944807
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73898271	0.96[AFR][1000 genomes]
rs73898280	0.89[AFR][1000 genomes]
rs73898289	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv587335	chr21:27715263-27955385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27933200-27945000	Weak transcription	Spleen	Spleen
2	chr21:27942400-27946000	Active TSS	Right Atrium	heart
3	chr21:27942600-27945800	Active TSS	Psoas Muscle	Psoas
4	chr21:27943400-27945400	Active TSS	Right Ventricle	heart
5	chr21:27943400-27945800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr21:27943400-27946000	Active TSS	H1 Cell Line	embryonic stem cell
7	chr21:27943400-27946000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
8	chr21:27943400-27946000	Active TSS	Fetal Lung	lung
9	chr21:27943400-27946000	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr21:27943400-27946200	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr21:27943600-27945200	Bivalent/Poised TSS	Liver	Liver
12	chr21:27943600-27945600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr21:27943600-27946000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr21:27943600-27946000	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr21:27943600-27946200	Active TSS	Fetal Kidney	kidney
16	chr21:27943800-27945000	Active TSS	Primary hematopoietic stem cells	blood
17	chr21:27943800-27946000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr21:27943800-27946000	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr21:27943800-27946200	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr21:27943800-27946600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr21:27944000-27946200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr21:27944000-27946200	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr21:27944200-27945000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr21:27944200-27945000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr21:27944200-27945000	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr21:27944200-27945200	Active TSS	Fetal Brain Female	brain
27	chr21:27944200-27945800	Active TSS	Fetal Stomach	stomach
28	chr21:27944200-27945800	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr21:27944200-27946000	Active TSS	H9 Cell Line	embryonic stem cell
30	chr21:27944200-27946000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr21:27944200-27946000	Active TSS	NHEK	skin
32	chr21:27944200-27946200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr21:27944200-27946200	ZNF genes & repeats	Fetal Brain Male	brain
34	chr21:27944400-27945000	Active TSS	Placenta	Placenta
35	chr21:27944400-27945000	Active TSS	Left Ventricle	heart
36	chr21:27944400-27945000	Bivalent/Poised TSS	NHDF-Ad	bronchial
37	chr21:27944400-27945400	Bivalent/Poised TSS	Adipose Nuclei	Adipose
38	chr21:27944400-27945400	Active TSS	Brain Germinal Matrix	brain
39	chr21:27944400-27945800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr21:27944400-27945800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr21:27944400-27945800	Active TSS	Duodenum Mucosa	Duodenum
42	chr21:27944400-27946000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr21:27944400-27946000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr21:27944400-27946000	Active TSS	NH-A	brain
45	chr21:27944400-27946200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr21:27944600-27945000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
47	chr21:27944600-27945000	Bivalent/Poised TSS	Fetal Thymus	thymus
48	chr21:27944600-27945400	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
49	chr21:27944600-27945600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr21:27944600-27945800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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