Variant report

Variant	rs73901610
Chromosome Location	chr21:28088119-28088120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12626187	0.84[EUR][1000 genomes]
rs12627713	0.81[EUR][1000 genomes]
rs12627735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56306036	0.98[EUR][1000 genomes]
rs7275254	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459223	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv587337	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28082800-28088400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:28083000-28088200	Weak transcription	Dnd41	blood
3	chr21:28083000-28088400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr21:28083400-28088400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr21:28087200-28088600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr21:28087200-28088800	Enhancers	Placenta	Placenta
7	chr21:28087600-28088400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr21:28088000-28088600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr21:28088000-28088800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr21:28088000-28088800	Enhancers	Brain Cingulate Gyrus	brain
11	chr21:28088000-28090000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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