Variant report

Variant	rs73902507
Chromosome Location	chr21:37791731-37791732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:37791564..37796333-chr21:37799622..37803689,7	K562	blood:
2	chr21:37785975..37787768-chr21:37790621..37793122,2	MCF-7	breast:
3	chr21:37786003..37787816-chr21:37790318..37792408,2	K562	blood:
4	chr21:37791237..37793228-chr21:38023999..38026076,2	MCF-7	breast:
5	chr21:37790642..37792475-chr21:37961293..37963642,2	K562	blood:
6	chr21:37756507..37759467-chr21:37791099..37794681,3	MCF-7	breast:
7	chr21:37791599..37796333-chr21:37798016..37803207,7	K562	blood:

Variant related genes	Relation type
ENSG00000159259	Chromatin interaction
ENSG00000230479	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73902510	1.00[AMR][1000 genomes]
rs73902519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33578	chr21:37488312-37819627	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1064194	chr21:37782214-37819820	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37758400-37792200	Weak transcription	Fetal Kidney	kidney
2	chr21:37758400-37793400	Weak transcription	Aorta	Aorta
3	chr21:37758400-37794600	Weak transcription	Left Ventricle	heart
4	chr21:37758400-37794800	Weak transcription	Right Ventricle	heart
5	chr21:37758600-37793400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr21:37758600-37794200	Weak transcription	Liver	Liver
7	chr21:37758600-37797600	Weak transcription	HSMM	muscle
8	chr21:37758800-37795000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr21:37761600-37792200	Weak transcription	Brain Angular Gyrus	brain
10	chr21:37761600-37792400	Weak transcription	Brain Hippocampus Middle	brain
11	chr21:37766000-37793000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr21:37766800-37794800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr21:37768400-37794000	Weak transcription	Psoas Muscle	Psoas
14	chr21:37770000-37794200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr21:37773200-37792200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr21:37774600-37792400	Weak transcription	Fetal Brain Male	brain
17	chr21:37775600-37794800	Weak transcription	Right Atrium	heart
18	chr21:37775600-37802200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr21:37776200-37794200	Weak transcription	NH-A	brain
20	chr21:37776200-37797400	Weak transcription	HSMMtube	muscle
21	chr21:37776400-37795000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr21:37777800-37792000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr21:37777800-37792800	Strong transcription	Dnd41	blood
24	chr21:37781400-37792400	Weak transcription	Placenta	Placenta
25	chr21:37783800-37794000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr21:37786000-37792000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr21:37786000-37792400	Weak transcription	Ovary	ovary
28	chr21:37786000-37794400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr21:37786000-37795000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr21:37786000-37801000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr21:37786400-37792000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr21:37786400-37792400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr21:37786400-37792400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr21:37786400-37801200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr21:37786400-37801200	Weak transcription	NHEK	skin
36	chr21:37786600-37792400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr21:37786600-37794400	Weak transcription	HepG2	liver
38	chr21:37786600-37794600	Weak transcription	Fetal Intestine Large	intestine
39	chr21:37786600-37794600	Weak transcription	Pancreas	Pancrea
40	chr21:37786600-37794800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr21:37786600-37796400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr21:37786800-37794400	Weak transcription	NHDF-Ad	bronchial
43	chr21:37786800-37801000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr21:37787200-37792400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr21:37787200-37803200	Weak transcription	Esophagus	oesophagus
46	chr21:37787400-37792400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr21:37787400-37792600	Weak transcription	Stomach Mucosa	stomach
48	chr21:37788400-37793400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr21:37788800-37792400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr21:37788800-37792400	Weak transcription	Fetal Muscle Leg	muscle

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